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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_038939
Reference: OH-1004 Chr: Chr09 Coordinates: 53675035-53679628 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2031 bp · LXL04_038939|LXL04_038939|OH1004|cDNA

ATGGCGATGGCGAGGGCAAGCTCTGGCCTCGCATACCCGGATCGTTTTTACGCCGCTGCTACTTACGCCGGCTTCGGCGGCTCCCCCACTTCATCTTCCAAAGGGGTCACATCCAAATTCTCTAATGACGTCGCTCTTTTGCTTTACGCCTTGTATCAACAGGCAACTGTTGGAGCTTGTAGCGTACCAAAACCAAGAGGTTGGAGTCCTGTGGAACAAAGCAAATGGACAAGTTGGAATGGTCTTGGAAACATGGCTTC...

CDS

Download CDS FASTA

2031 bp · LXL04_038939|LXL04_038939|OH1004|CDS

ATGGCGATGGCGAGGGCAAGCTCTGGCCTCGCATACCCGGATCGTTTTTACGCCGCTGCTACTTACGCCGGCTTCGGCGGCTCCCCCACTTCATCTTCCAAAGGGGTCACATCCAAATTCTCTAATGACGTCGCTCTTTTGCTTTACGCCTTGTATCAACAGGCAACTGTTGGAGCTTGTAGCGTACCAAAACCAAGAGGTTGGAGTCCTGTGGAACAAAGCAAATGGACAAGTTGGAATGGTCTTGGAAACATGGCTTC...

Protein

Download Protein FASTA

676 aa · LXL04_038939|LXL04_038939|OH1004|PROTEIN

MAMARASSGLAYPDRFYAAATYAGFGGSPTSSSKGVTSKFSNDVALLLYALYQQATVGACSVPKPRGWSPVEQSKWTSWNGLGNMASIEAMRLFVKILEEEDPGWYSRAANFISEPVVDVEMNHNVKMELPSKNEISLPETKTIPHENGNSVEPHDKDVMVEGLSSVVVYDQWVDPPVSGQRPKPRYEHAAAVIDDKMYIFGGNHNGRYLNDLQTLDLRNWTWSKVEVKPNSEAPVTVTPCAGHSLIPWEGNKLISIAGH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_038939
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_038939
LocationChr09:53675035-53679628 (-)
DescriptionSimilar to ACBP4: Acyl-CoA-binding domain-containing protein 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g05420 Binds medium- and long-chain acyl-CoA esters with very high affinity.
ACBP4 and ACBP5, novel Arabidopsis acyl-CoA-binding proteins with kelch motifs that bind oleoyl-CoA.2004 · DOI: 10.1007/s11103-004-0642-z
Arabidopsis acyl-CoA-binding proteins ACBP4 and ACBP5 are subcellularly localized to the cytosol and ACBP4 depletion affects membrane lipid composition.2008 · DOI: 10.1007/s11103-008-9392-7
At5g27630 Binds medium- and long-chain acyl-CoA esters with very high affinity.
ACBP4 and ACBP5, novel Arabidopsis acyl-CoA-binding proteins with kelch motifs that bind oleoyl-CoA.2004 · DOI: 10.1007/s11103-004-0642-z

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0835600 Binds medium- and long-chain acyl-CoA esters with high affinity.
The rice acyl-CoA-binding protein gene family: phylogeny, expression and functional analysis.2011 · DOI: 10.1111/j.1469-8137.2010.03546.x
Subcellular localization of rice acyl-CoA-binding proteins (ACBPs) indicates that OsACBP6::GFP is targeted to the peroxisomes.2014 · DOI: 10.1111/nph.12809
Os03g0835800 Acts synergistically with RAB5A and VPS9A to regulate dense vesicle-mediated post-Golgi trafficking of major storage proteins in the seed endosperm during grain filling and maturation.
GLUTELIN PRECURSOR ACCUMULATION3 encodes a regulator of post-Golgi vesicular traffic essential for vacuolar protein sorting in rice endosperm.2014 · DOI: 10.1105/tpc.113.121376
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038939 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0001666 response to hypoxia Biological Process
GO:0006869 lipid transport Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0007165 signal transduction Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0000326 protein storage vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005777 peroxisome Cellular Component
KEGG gene cross-reference
ath:AT3G05420
ath:AT5G27630
dosa:Os03g0835600
dosa:Os03g0835800
osa:4334700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.416
Rank 1 · LXL04_038939 · OH-1004
Nucleus0.252
Rank 2 · LXL04_038939 · OH-1004
Golgi apparatus0.185
Rank 3 · LXL04_038939 · OH-1004
Cell membrane0.140
Rank 4 · LXL04_038939 · OH-1004
Lysosome / Vacuole0.099
Rank 5 · LXL04_038939 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00887.25ACBP35-97 aa
PF13415.13Beta-prop_FBX42155-262 aa
PF24681.2Kelch_KLHDC2_KLHL20_DRC7171-261 aa
PF24981.2Beta-prop_ATRN-LZTR1171-298 aa
PF13854.13Kelch_HCF172-203 aa
PF13418.13Beta-prop_TYW4181-369 aa
PF01344.32Kelch_1185-226 aa
PF07646.22Kelch_2185-230 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_038939PF00887.25ACBP35971.1e-1661.5
LXL04_038939PF13415.13Beta-prop_FBX421552621.1e-75254.5
LXL04_038939PF24681.2Kelch_KLHDC2_KLHL20_DRC71712616.7e-79265.0
LXL04_038939PF24981.2Beta-prop_ATRN-LZTR11712984e-45155.0
LXL04_038939PF13854.13Kelch_HCF1722031.3e-34120.8
LXL04_038939PF13418.13Beta-prop_TYW41813696.3e-1349.9
LXL04_038939PF01344.32Kelch_11852261.2e-29102.2
LXL04_038939PF07646.22Kelch_21852301.8e-2381.9
LXL04_038939PF13415.13Beta-prop_FBX421863621.1e-75254.5
LXL04_038939PF13854.13Kelch_HCF2073621.3e-34120.8
LXL04_038939PF24681.2Kelch_KLHDC2_KLHL20_DRC72434676.7e-79265.0
LXL04_038939PF24996.1NANM2654696.1e-1142.5
LXL04_038939PF01344.32Kelch_12933331.2e-29102.2
LXL04_038939PF24981.2Beta-prop_ATRN-LZTR13064784e-45155.0
LXL04_038939PF13415.13Beta-prop_FBX423444941.1e-75254.5
LXL04_038939PF13854.13Kelch_HCF3564121.3e-34120.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9MA55Arabidopsis thalianaAcyl-CoA-binding domain-containing protein 470.833%Swiss-Protstrong database homology
Q8RWD9Arabidopsis thalianaAcyl-CoA-binding domain-containing protein 564.785%Swiss-Protstrong database homology
Q75LJ4Oryza sativa subsp. japonicaAcyl-CoA-binding domain-containing protein 666.667%Swiss-Protstrong database homology
Q10AZ7Oryza sativa subsp. japonicaProtein GLUTELIN PRECURSOR ACCUMULATION 331.408%Swiss-Protweak database homology

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