TkA04G462720 | RubberDandelionOmics

Gene overview

TkA04G462720

Reference: TK1151 Chr: Chr04 Coordinates: 116812059-116814326 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2035 bp · TkA04G462720|TK1151|cDNA

CCTAAATATGATTATCGCAGCAACCCTAATTTGGTATGTGATCCTAACCCCATAAATTTCTGGGATAAGCGTTCCGAACATTCTCATCAGTGGAATCGAACATTCTCTTTCTGTATTTTATGGAAGAGGAAGGGGAAGAACAAGGTGGAGACGACGATTCTTCTCCCCCTCTTTCTCCTTCATCAAAATCAATTACGCTAGCTCCATCGATTTGATCGAGACATATTATTGAATTGTCATAAAAGACAAATTGCAGGAAA...

CDS

Download CDS FASTA

1392 bp · TkA04G462720|TK1151|CDS

ATGGGGAAGTCGAACCCATTCTCGTTTCGCCGGAACAGCAGTAGCAGCAGCACAACCAGGCGTCGCCGGACGACATCGAAGAAGGTAGGCGAGTCACCGTTACTTTTGTCGCAGGCCAACACGCCATCTCCTTCGTCACCCGCTAACCCCGGTGATGTTGTGGCGGCGACCGGAAGCGGGAAACCAATTGGGTCTTCGGTGGCGAAACCGAAGAAAAAAGCCGGTGGAGCGAGGTTGTGGATGCGGTTCGATAGGTCTGG...

Protein

Download Protein FASTA

463 aa · TkA04G462720|TK1151|PROTEIN

MGKSNPFSFRRNSSSSSTTRRRRTTSKKVGESPLLLSQANTPSPSSPANPGDVVAATGSGKPIGSSVAKPKKKAGGARLWMRFDRSGESELFECDKNTIIKRAGIPARDLRILGPIFSNSSNILARERAMVVNLEYIKAIVTAEEVLLLDPLRQEVLPFVDQLRHQLSHKNHFNTSGPQGGRQLALRDTESNLSASGRWQPVPETSEGLQAELPFEFQVLEIALEVVCTYLDSSVADLERDAYPVLDELAKNVSTKNLER...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G462720`
TK1151 ID	TkA04G462720
OH-1004 ID	LXL04_038761
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G462720

Location Chr04:116812059-116814326 (+)

Description Similar to MRS2-4: Magnesium transporter MRS2-4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g58970`	Magnesium transporter that may mediate the influx of magnesium.	No verified direct reference in this release
`At4g28580`	Magnesium transporter that mediates the influx/efflux of magnesium in a concentration-dependent manner.	A mitochondrial magnesium transporter functions in Arabidopsis pollen development.2008 · DOI: 10.1093/mp/ssn031

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0545000`	Putative magnesium transporter.	No verified direct reference in this release
`UniProt: A2Z9W7`	Putative magnesium transporter.	No verified direct reference in this release
`UniProt: A2XCA0`	Putative magnesium transporter.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038761 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009555 pollen development Biological Process

GO:0015693 magnesium ion transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0031966 mitochondrial membrane Cellular Component

GO:0015095 magnesium ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G58970

ath:AT4G28580

dosa:Os10g0545000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.535

Rank 1 · TkA04G462720 · TK1151

Lysosome / Vacuole0.132

Rank 2 · TkA04G462720 · TK1151

Cytoplasm0.125

Rank 3 · TkA04G462720 · TK1151

Endoplasmic reticulum0.115

Rank 4 · TkA04G462720 · TK1151

Golgi apparatus0.090

Rank 5 · TkA04G462720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22099MRS2-like92-305 aa

PF08663HalX216-242 aa

PF01544CorA231-289 aa

PF26012HH_RND_rel237-304 aa

PF29562DUF8567257-288 aa

PF19111DUF5798258-287 aa

PF08663HalX268-295 aa

PF22099MRS2-like338-391 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G462720	`PF22099`	MRS2-like	92	305	1.5e-32	113.5
TkA04G462720	`PF08663`	HalX	216	242	1.3	10.1
TkA04G462720	`PF01544`	CorA	231	289	1.1e-05	25.6
TkA04G462720	`PF26012`	HH_RND_rel	237	304	0.075	14.0
TkA04G462720	`PF29562`	DUF8567	257	288	0.25	11.9
TkA04G462720	`PF19111`	DUF5798	258	287	6.5	7.7
TkA04G462720	`PF08663`	HalX	268	295	1.3	10.1
TkA04G462720	`PF22099`	MRS2-like	338	391	1.5e-32	113.5
TkA04G462720	`PF29562`	DUF8567	346	396	0.25	11.9
TkA04G462720	`PF01544`	CorA	354	449	1.1e-05	25.6
TkA04G462720	`PF19111`	DUF5798	356	393	6.5	7.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93ZD7`	Arabidopsis thaliana	sp\|Q93ZD7\|MRS24_ARATH Magnesium transporter MRS2-4	65.200%	Swiss-Prot	High
`Q1PE39`	Arabidopsis thaliana	sp\|Q1PE39\|MRS26_ARATH Magnesium transporter MRS2-6, mitochondrial	50.400%	Swiss-Prot	High
`A3BV82`	Oryza sativa subsp. japonica	sp\|A3BV82\|MRS2G_ORYSJ Putative magnesium transporter MRS2-G	61.900%	Swiss-Prot	High
`A2Z9W7`	Oryza sativa subsp. indica	sp\|A2Z9W7\|MRS2G_ORYSI Putative magnesium transporter MRS2-G	61.900%	Swiss-Prot	High
`A2XCA0`	Oryza sativa subsp. indica	sp\|A2XCA0\|MRS2H_ORYSI Putative magnesium transporter MRS2-H	49.700%	Swiss-Prot	Medium

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