TkA04G461550 | RubberDandelionOmics

Gene overview

TkA04G461550

Reference: TK1151 Chr: Chr04 Coordinates: 116413016-116414866 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1851 bp · TkA04G461550|TK1151|cDNA

ATGAATCATCAATTAACTGCGGCTATCTTCTTGATTCTAAGTTTTTCATCTCTAGTTTCCTCTCAAAAACTCACCTCTTGTCCACTGGACTTCAACTATGTGGGCCGAATAAAATGGCCGACCACCGATTGCCAATCCCCCGGCCCCACATCTTCGTGTTGTCAAACTCTTCTTAGTGTCTTCGGTATCGGCTTAGCTCAACACCTCAAAGATACTTCTCAATTCCACCTCTCTAATCTCAAAACATCATCATCTTGCCT...

CDS

Download CDS FASTA

1851 bp · TkA04G461550|TK1151|CDS

ATGAATCATCAATTAACTGCGGCTATCTTCTTGATTCTAAGTTTTTCATCTCTAGTTTCCTCTCAAAAACTCACCTCTTGTCCACTGGACTTCAACTATGTGGGCCGAATAAAATGGCCGACCACCGATTGCCAATCCCCCGGCCCCACATCTTCGTGTTGTCAAACTCTTCTTAGTGTCTTCGGTATCGGCTTAGCTCAACACCTCAAAGATACTTCTCAATTCCACCTCTCTAATCTCAAAACATCATCATCTTGCCT...

Protein

Download Protein FASTA

616 aa · TkA04G461550|TK1151|PROTEIN

MNHQLTAAIFLILSFSSLVSSQKLTSCPLDFNYVGRIKWPTTDCQSPGPTSSCCQTLLSVFGIGLAQHLKDTSQFHLSNLKTSSSCLSDFQNKLTSLSLSTNLTSYCFNPTQFVISTNTCAGIQNLQDWREKLGNETILDSTCGNDLSDLSACDACGYAGLTIQKELIGIDGNTSHSNVCFYFIVLYSAGVVNKFGPQSNSAVTCNFDINVLLKSNKDGNSSLIFGLIGGFGGVLVISCFAGLFFWWDRKKKRGNINEFE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G461550`
TK1151 ID	TkA04G461550
OH-1004 ID	LXL04_030286
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	48.100
Protein coverage (%)	TK1151 94.481 / OH-1004 52.050 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G461550

Location Chr04:116413016-116414866 (-)

Description Similar to At1g77360: Pentatricopeptide repeat-containing protein At1g77360, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g11050`	Probable receptor-like protein kinase At1g11050.	No verified direct reference in this release
`At2g48010`	Probable LRR receptor-like serine/threonine-protein kinase RKF3.	No verified direct reference in this release
`At1g07650`	Probable LRR receptor-like serine/threonine-protein kinase At1g07650.	No verified direct reference in this release
`At1g56140`	Probable LRR receptor-like serine/threonine-protein kinase At1g56140.	No verified direct reference in this release
`At1g01540`	Probable serine/threonine-protein kinase At1g01540.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030286 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G11050

ath:AT1G52640

ath:AT1G71060

ath:AT1G77360

ath:AT2G48010

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.845

Rank 1 · TkA04G461550 · TK1151

Endoplasmic reticulum0.097

Rank 2 · TkA04G461550 · TK1151

Cytoplasm0.072

Rank 3 · TkA04G461550 · TK1151

Nucleus0.045

Rank 4 · TkA04G461550 · TK1151

Lysosome / Vacuole0.036

Rank 5 · TkA04G461550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19160SPARK25-181 aa

PF03929PepSY_TM228-273 aa

PF07647SAM_2272-294 aa

PF00069Pkinase288-499 aa

PF07714PK_Tyr_Ser-Thr290-495 aa

PF03109ABC1293-315 aa

PF03109ABC1363-450 aa

PF14531Kinase-like379-500 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G461550	`PF19160`	SPARK	25	181	4.6e-42	144.8
TkA04G461550	`PF03929`	PepSY_TM	228	273	0.25	11.8
TkA04G461550	`PF07647`	SAM_2	272	294	0.25	12.2
TkA04G461550	`PF00069`	Pkinase	288	499	8.6e-44	150.6
TkA04G461550	`PF07714`	PK_Tyr_Ser-Thr	290	495	3.8e-40	138.5
TkA04G461550	`PF03109`	ABC1	293	315	0.00053	19.9
TkA04G461550	`PF03109`	ABC1	363	450	0.00053	19.9
TkA04G461550	`PF14531`	Kinase-like	379	500	0.0064	16.5
TkA04G461550	`PF17667`	Pkinase_fungal	402	488	0.36	10.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O04086`	Arabidopsis thaliana	sp\|O04086\|Y1105_ARATH Probable receptor-like protein kinase At1g11050	60.800%	Swiss-Prot	High
`P93050`	Arabidopsis thaliana	sp\|P93050\|RKF3_ARATH Probable LRR receptor-like serine/threonine-protein kinase RKF3	37.000%	Swiss-Prot	Medium
`C0LGE0`	Arabidopsis thaliana	sp\|C0LGE0\|Y1765_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07650	41.800%	Swiss-Prot	Medium
`C0LGH3`	Arabidopsis thaliana	sp\|C0LGH3\|Y5614_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56140	40.000%	Swiss-Prot	Medium
`Q3EDL4`	Arabidopsis thaliana	sp\|Q3EDL4\|Y1154_ARATH Probable serine/threonine-protein kinase At1g01540	40.300%	Swiss-Prot	Low

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