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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G452550
Reference: TK1151 Chr: Chr04 Coordinates: 114067169-114070772 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1409 bp · TkA04G452550|TK1151|cDNA

ATCAATAACAAGTTTCAAAACACCAAACATAAGTTGATAATATGAAATCCTAAAATAGTCTCATATATCAAATCTATTTATGTTGTAGCCGGATATGTAAGATTCTCAAACTACTGCCAAAAATGGATGTAACATTGTCTGCAGCAGGCACCACGCTATCCAAAACCCTCGATTGCTCCGGCCAAACCTTAAGGAGTAATTTAACGCTCCTCCGCCCTGGACAGATTACAACCATCCCGAGTGCTGTCTTTCGGAGATCA...

CDS

Download CDS FASTA

1047 bp · TkA04G452550|TK1151|CDS

ATGGATGTAACATTGTCTGCAGCAGGCACCACGCTATCCAAAACCCTCGATTGCTCCGGCCAAACCTTAAGGAGTAATTTAACGCTCCTCCGCCCTGGACAGATTACAACCATCCCGAGTGCTGTCTTTCGGAGATCATCAGTCAACTTCGGATCGGAATCTCCGTTGTTTGGGTTGAGGAAGGCCGGAGCTGCGGTATCTCATGTTTGGGGCCGCCTGGAGTGCGTTTCTAGCCCCGTTGCTTCCTATGGTGGCGGTGG...

Protein

Download Protein FASTA

348 aa · TkA04G452550|TK1151|PROTEIN

MDVTLSAAGTTLSKTLDCSGQTLRSNLTLLRPGQITTIPSAVFRRSSVNFGSESPLFGLRKAGAAVSHVWGRLECVSSPVASYGGGGIGGGADGGKVRANPIAAAADDVSPLSSDVITLDVQAQVASATVDLKTEIAVVLPVSEAKATPNWQKVIGEDLAKHLTTCGFTSTLRVMTKVNNNNRNKLKLEATMEEIEENKGNHRWNAAIANLTELSNNINSLEKLLVQRVVYVDPNTYNRASLTSEQSRTIKILEQRVERL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G452550
TK1151 IDTkA04G452550
OH-1004 IDLXL04_017105
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)43.300
Protein coverage (%)TK1151 49.713 / OH-1004 22.386
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G452550
LocationChr04:114067169-114070772 (+)
DescriptionSimilar to PAA1: Copper-transporting ATPase PAA1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g33520 Mediates copper transfer across the plastid envelope.
Biochemical characterization of AtHMA6/PAA1, a chloroplast envelope Cu(I)-ATPase.2011 · DOI: 10.1074/jbc.m111.241034

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017105 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006825 copper ion transport Biological Process
GO:0009767 photosynthetic electron transport chain Biological Process
GO:0035434 copper ion transmembrane transport Biological Process
GO:0055070 copper ion homeostasis Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009536 plastid Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0016020 membrane Cellular Component
GO:0031969 chloroplast membrane Cellular Component
KEGG gene cross-reference
ath:AT4G33520
ath:AT5G21930
sha:SH0496
syc:syc1785_d
syf:Synpcc7942_2317
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.352
Rank 1 · TkA04G452550 · TK1151
Cytoplasm0.342
Rank 2 · TkA04G452550 · TK1151
Cell membrane0.136
Rank 3 · TkA04G452550 · TK1151
Plastid0.120
Rank 4 · TkA04G452550 · TK1151
Mitochondrion0.087
Rank 5 · TkA04G452550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17511Mobilization_B102-153 aa
PF11839Alanine_zipper104-130 aa
PF30378CEP135_TSGA10_CC105-141 aa
PF28544Helical_needle105-127 aa
PF05258DciA141-169 aa
PF19745FUT8_N_cat164-335 aa
PF10046BLOC1_2174-224 aa
PF28544Helical_needle174-246 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G452550PF17511Mobilization_B1021534.78.3
TkA04G452550PF11839Alanine_zipper1041305.48.1
TkA04G452550PF30378CEP135_TSGA10_CC1051410.04612.8
TkA04G452550PF28544Helical_needle1051271.99.0
TkA04G452550PF05258DciA1411690.1313.2
TkA04G452550PF19745FUT8_N_cat1643353.76.9
TkA04G452550PF10046BLOC1_21742241.010.5
TkA04G452550PF28544Helical_needle1742461.99.0
TkA04G452550PF07889DUF16641851973.28.5
TkA04G452550PF07889DUF16642092663.28.5
TkA04G452550PF09548Spore_III_AB2403430.01116.2
TkA04G452550PF30378CEP135_TSGA10_CC2443320.04612.8
TkA04G452550PF10046BLOC1_22452641.010.5
TkA04G452550PF17511Mobilization_B2463234.78.3
TkA04G452550PF11839Alanine_zipper2512975.48.1
TkA04G452550PF28544Helical_needle2923261.99.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SZC9Arabidopsis thalianasp|Q9SZC9|HMA6_ARATH Copper-transporting ATPase PAA1, chloroplastic51.600%Swiss-ProtMedium

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