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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G452540
Reference: TK1151 Chr: Chr04 Coordinates: 114059243-114066075 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

985 bp · TkA04G452540|TK1151|cDNA

CTCCAATCCTTCATTCTACCCCATCTCTTTCTCCGCTCGCCACACACAGTTCCGACTTCCGGAAATACTAGCATGAACATCATCCATTGAATACGCTTTGTTTTTCAGCTTCGGGTTTAAACCTAATCTGTCACTATCTAGAAATGTCGGGTCACGGAAATACACACTGGTGCTACCAATGCCTTGAACCAATTCGTCTCCAAGATCGCGATCCAGTTTGCCCGTATTGTTGTGGAGGATTCGTGCAAGAACTCAATGAA...

CDS

Download CDS FASTA

708 bp · TkA04G452540|TK1151|CDS

ATGTCGGGTCACGGAAATACACACTGGTGCTACCAATGCCTTGAACCAATTCGTCTCCAAGATCGCGATCCAGTTTGCCCGTATTGTTGTGGAGGATTCGTGCAAGAACTCAATGAAGATTTTGGGCCTTTTCATGGACACGATGCTTCTGACTACGGATTCATGGATCCATTCCCAAACCCTAGAAACAGATTCATGGATGCCTTTACTGAGTTAATCGGGCAAAGAATGGGTGAGAGAAACCCTAACTTCTTTGAGCT...

Protein

Download Protein FASTA

235 aa · TkA04G452540|TK1151|PROTEIN

MSGHGNTHWCYQCLEPIRLQDRDPVCPYCCGGFVQELNEDFGPFHGHDASDYGFMDPFPNPRNRFMDAFTELIGQRMGERNPNFFELFNGVRVGPRPSNATNMFMGTGLENLIEQLIANESRHGPPPATQSAIDSLPIIRITNRHLNMESHCPVCQDKFDLGSEARMMPCHHIYHSGCIVPWLLEHNSCPVCRLELSPQGSSSNSNSSSNSTGAHDTYQSEGRMDPLSFLWPFRL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G452540
TK1151 IDTkA04G452540
OH-1004 IDLXL04_018545
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)33.100
Protein coverage (%)TK1151 97.021 / OH-1004 52.527
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G452540
LocationChr04:114059243-114066075 (-)
DescriptionSimilar to CAM53: Calmodulin-related protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g40830 Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. No verified direct reference in this release
At3g56580 E3 ubiquitin-protein ligase that promotes osmotic stress and abscisic acid (ABA) responses.
The atrzf1 mutation of the novel RING-type E3 ubiquitin ligase increases proline contents and enhances drought tolerance in Arabidopsis.2013 · DOI: 10.1016/j.plantsci.2012.12.007
PCA22 acts as a suppressor of atrzf1 to mediate proline accumulation in response to abiotic stress in Arabidopsis.2017 · DOI: 10.1093/jxb/erx069
At3g19950 E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. No verified direct reference in this release
At5g59550 E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid-dependent drought stress responses.
Suppression of Arabidopsis RING-DUF1117 E3 ubiquitin ligases, AtRDUF1 and AtRDUF2, reduces tolerance to ABA-mediated drought stress.2012 · DOI: 10.1016/j.bbrc.2012.02.131

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018545 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016460 myosin II complex Cellular Component
GO:0005509 calcium ion binding Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.719
Rank 1 · TkA04G452540 · TK1151
Nucleus0.574
Rank 2 · TkA04G452540 · TK1151
Endoplasmic reticulum0.052
Rank 3 · TkA04G452540 · TK1151
Mitochondrion0.045
Rank 4 · TkA04G452540 · TK1151
Lysosome / Vacuole0.043
Rank 5 · TkA04G452540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14369Zn_ribbon_196-37 aa
PF13639zf-RING_28-29 aa
PF13923zf-C3HC4_29-29 aa
PF00097zf-C3HC49-29 aa
PF13920zf-C3HC4_39-29 aa
PF06906DUF12729-35 aa
PF13445zf-RING_UBOX10-27 aa
PF14634zf-RING_510-29 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G452540PF14369Zn_ribbon_196371.1e-0835.8
TkA04G452540PF13639zf-RING_28298.2e-1349.1
TkA04G452540PF13923zf-C3HC4_29291.5e-0835.0
TkA04G452540PF00097zf-C3HC49291.8e-0628.4
TkA04G452540PF13920zf-C3HC4_39290.0001522.2
TkA04G452540PF06906DUF12729350.2612.2
TkA04G452540PF13445zf-RING_UBOX10279.7e-0626.2
TkA04G452540PF14634zf-RING_510290.0001522.4
TkA04G452540PF17123zf-RING_1113214.2e-0627.1
TkA04G452540PF17120zf-RING_1621315.07.5
TkA04G452540PF04423Rad50_zn_hook23320.212.2
TkA04G452540PF12861zf-ANAPC1124290.01915.7
TkA04G452540PF18717CxC425300.0215.5
TkA04G452540PF15750UBZ_FAAP2026350.3511.4
TkA04G452540PF18717CxC41421930.0215.5
TkA04G452540PF06906DUF12721461970.2612.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O22197Arabidopsis thalianasp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A41.400%Swiss-ProtMedium
Q94AK4Arabidopsis thalianasp|Q94AK4|RZF1_ARATH E3 ubiquitin-protein ligase RZF153.100%Swiss-ProtMedium
Q8LPN7Arabidopsis thalianasp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like40.300%Swiss-ProtMedium
Q940T5Arabidopsis thalianasp|Q940T5|RDUF2_ARATH E3 ubiquitin-protein ligase RDUF235.000%Swiss-ProtMedium

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