TkA04G438490 | RubberDandelionOmics

Gene overview

TkA04G438490

Reference: TK1151 Chr: Chr04 Coordinates: 110597519-110598450 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

851 bp · TkA04G438490|TK1151|cDNA

CCGTTCTTGAAAATGGCGGGTTCTGAGGTTGTGCTGTTAGACACGTGGATGAGCTTGTTTGGTATGAGGGTCAAAATTGCTCTCGCTGAAAAGGGTATCGAATATGAGCGAAGAGCAGAAGACTTGGCCAACAAAAGCTCACTGCTACTTCAAATGAACCCGGTTCACAAGAGAGTTCCTGTTCTCATCCACCATGGAAAACCCATCTCTGAATCCAACATCATTGTTCAATACATCGATGAGGCATGGAAGAACAACTC...

CDS

Download CDS FASTA

450 bp · TkA04G438490|TK1151|CDS

ATGGAAAACCCATCTCTGAATCCAACATCATTGTTCAATACATCGATGAGGCATGGAAGAACAACTCTCCGCCATTGCTGCCCTCTGATCCTTGTTCAGAGCTCAGGCCAGATGAGTGAGGCTAGATGGAGGATATGGACCAGAAAAGGAGAAGATTTGGAAAGAGCAAAGAAGGAGTTCATAGATTGGATGAAGGTGTTGGAAGGGGAGCTAGGAGAAAAGCCATATTTGATGGGGGAGAGCTTTGGGTATGTGGATAT...

Protein

Download Protein FASTA

149 aa · TkA04G438490|TK1151|PROTEIN

MENPSLNPTSLFNTSMRHGRTTLRHCCPLILVQSSGQMSEARWRIWTRKGEDLERAKKEFIDWMKVLEGELGEKPYLMGESFGYVDIVMAPFFSSFYVLEKIRDMSIEKECPKIVAWAKRCMERESVSKSLVEPHKVYEYVMELQKKLG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G438490`
TK1151 ID	TkA04G438490
OH-1004 ID	LXL04_038519
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	88.500
Protein coverage (%)	TK1151 75.839 / OH-1004 69.753 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G438490

Location Chr04:110597519-110598450 (+)

Description Similar to PARA: Probable glutathione S-transferase parA

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g53680`	May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides.	No verified direct reference in this release
`At1g78370`	Exhibits glutathione-dependent thiol transferase activities.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038519 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006749 glutathione metabolic process Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009407 toxin catabolic process Biological Process

GO:0009629 response to gravity Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0042631 cellular response to water deprivation Biological Process

GO:2000030 regulation of response to red or far red light Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G78370

ath:AT1G78380

nta:107772524

nta:107782951

nta:107823949

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.477

Rank 1 · TkA04G438490 · TK1151

Peroxisome0.248

Rank 2 · TkA04G438490 · TK1151

Nucleus0.163

Rank 3 · TkA04G438490 · TK1151

Mitochondrion0.150

Rank 4 · TkA04G438490 · TK1151

Endoplasmic reticulum0.048

Rank 5 · TkA04G438490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00043GST_C51-125 aa

PF22041GST_C_751-96 aa

PF13410GST_C_253-120 aa

PF14497GST_C_356-129 aa

PF17171GST_C_664-120 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G438490	`PF00043`	GST_C	51	125	7.8e-10	39.6
TkA04G438490	`PF22041`	GST_C_7	51	96	0.032	14.9
TkA04G438490	`PF13410`	GST_C_2	53	120	3.2e-07	31.1
TkA04G438490	`PF14497`	GST_C_3	56	129	2.8e-06	28.2
TkA04G438490	`PF17171`	GST_C_6	64	120	0.0034	17.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C8M3`	Arabidopsis thaliana	sp\|Q9C8M3\|GSTUS_ARATH Glutathione S-transferase U28	57.000%	Swiss-Prot	High
`Q8L7C9`	Arabidopsis thaliana	sp\|Q8L7C9\|GSTUK_ARATH Glutathione S-transferase U20	46.200%	Swiss-Prot	Medium

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