Gene Card
Gene overview
cDNA / CDS / Protein Sequences
659 bp · LXL04_038519|LXL04_038519|OH1004|cDNA
ATGGCGGGCTCTCAGGTTGTGCTTTTAGACACGTGGATCAGCTTGTTTAGTATGAGGGTCAGAATTGCTCTCGCTGAAAAGGGTGTTGAATATGAGCGAAGAGAAGAAGACTTGACCAACAAAAGCTCACTGCTCCTTCGGATGAACCAGTTCACAAGAAAGTTCCTGTTCTGATCCACCATGGCAAACCCATCTCTGAATCCACCATTATTGTTCAGTACATCGATGAGGCCTGGCAGAACAACTCTCCGCCATTTCTG...
489 bp · LXL04_038519|LXL04_038519|OH1004|CDS
CTGATCCACCATGGCAAACCCATCTCTGAATCCACCATTATTGTTCAGTACATCGATGAGGCCTGGCAGAACAACTCTCCGCCATTTCTGCCGTCTGATCCTTATCTCAGAGCTCAGGCCAGGTTCTGGGCTGATTTCATCGACAAGAAGATATCTGATGCTAGATGGAGGATATGGAGCACAAAAGGAGAAGATTTGGAAAGGGCAAAGAAGGAGTTCATAGATGGGATGAAGGTGTTGGAAGGGGAGCTTGGAGAAAA...
Protein
Download Protein FASTA162 aa · LXL04_038519|LXL04_038519|OH1004|PROTEIN
MIHHGKPISESTIIVQYIDEAWQNNSPPFLPSDPYLRAQARFWADFIDKKISDARWRIWSTKGEDLERAKKEFIDGMKVLEGELGEKPYLMGESFGYVDIVMAPLCSSFYALEKIGNMSIEKECPKIVAWAKRCMERESVSKSLAEPHKVYEYVLELQKKLG
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_038519 |
|---|---|
| TK1151 ID | TkA04G438490 |
| OH-1004 ID | LXL04_038519 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 88.500 |
| Protein coverage (%) | TK1151 75.839 / OH-1004 69.753Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_038519 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr09:43058538-43059669 (+) | |||||||||
| Description | Similar to PARA: Probable glutathione S-transferase parA | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006749 glutathione metabolic process Biological Process GO:0006979 response to oxidative stress Biological Process GO:0009407 toxin catabolic process Biological Process GO:0009629 response to gravity Biological Process GO:0009734 auxin-activated signaling pathway Biological Process GO:0042631 cellular response to water deprivation Biological Process GO:2000030 regulation of response to red or far red light Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G78370 ath:AT1G78380 nta:107772524 nta:107782951 nta:107823949 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00043.31GST_C65-138 aaPF13410.12GST_C_266-133 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_038519 | PF00043.31 | GST_C | 65 | 138 | 4.9e-09 | 37.0 |
| LXL04_038519 | PF13410.12 | GST_C_2 | 66 | 133 | 5.8e-08 | 33.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.