TkA04G437260 | RubberDandelionOmics

Gene overview

TkA04G437260

Reference: TK1151 Chr: Chr04 Coordinates: 110297356-110304539 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1990 bp · TkA04G437260|TK1151|cDNA

AGAAACTAGTAGGTGAATCTTTAATACTAGAGAATTTCGATTTGGCCCCTCCTCCCTCTTCTACCTAACCAATACACACATGATGATCCATTCTTCCACCTACCTACTCCATCTAATTAAACACGCATGCCCATTTCTCCTTCCATATTTAACTTACAGAATAAAAATTTACCTCTTCACCAAAAAATACACACAGCAAAGGTGATAATAATTTTCATAATACCAATGGAGTTCCTCTTCCTCCTCCTCTTGACTTCCTC...

CDS

Download CDS FASTA

1539 bp · TkA04G437260|TK1151|CDS

ATGCCCATTTCTCCTTCCATATTTAACTTACAGAATAAAAATTTACCTCTTCACCAAAAAATACACACAGCAAAGGTGATAATAATTTTCATAATACCAATGGAGTTCCTCTTCCTCCTCCTCTTGACTTCCTCCACCACCCTCATGGCCTACTCTCAGACCATCGTCGAAACCTTACCGGGATACCCTGGTCCTCTCCCTTTCAAACTCGAAACAGGGTACATAGGTGTAGGGGAAGATGAAGCTGTGCAGCTTTTTTA...

Protein

Download Protein FASTA

512 aa · TkA04G437260|TK1151|PROTEIN

MPISPSIFNLQNKNLPLHQKIHTAKVIIIFIIPMEFLFLLLLTSSTTLMAYSQTIVETLPGYPGPLPFKLETGYIGVGEDEAVQLFYYFVESEGNPEEDPLIVWLAGGPGCGTLRAFFFEIGPMQIKYGNYMDNVPALKLDPNSWTKVANVIYLDAPTLTGYSYTKTPEVVRSSDTTSASQTAEFLRKFVRTHPKFLKNPMYVTGISYSGIVIPIITEELYKGNDEGLEPIVNIQGYMGGNPLTNKTGDINSRLEYAYRV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G437260`
TK1151 ID	TkA04G437260
OH-1004 ID	LXL04_038513
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G437260

Location Chr04:110297356-110304539 (-)

Description Similar to SCPL18: Serine carboxypeptidase-like 18

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g33540`	Probable carboxypeptidase.	No verified direct reference in this release
`At2g22980`	Catalyzes the formation of 1,2-bis-O-sinapoyl beta-D-glucoside.	Related Arabidopsis serine carboxypeptidase-like sinapoylglucose acyltransferases display distinct but overlapping substrate specificities.2007 · DOI: 10.1104/pp.107.098970
`At3g10450`	Probable carboxypeptidase.	No verified direct reference in this release
`At1g73280`	Probable carboxypeptidase.	No verified direct reference in this release
`At3g12203`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038513 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0019748 secondary metabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups Molecular Function

GO:0016752 sinapoyltransferase activity Molecular Function

GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity Molecular Function

KEGG gene cross-reference

ag:QGI57842

ath:AT1G33540

ath:AT1G73280

ath:AT2G22980

ath:AT3G10450

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.431

Rank 1 · TkA04G437260 · TK1151

Extracellular0.218

Rank 2 · TkA04G437260 · TK1151

Endoplasmic reticulum0.131

Rank 3 · TkA04G437260 · TK1151

Cytoplasm0.101

Rank 4 · TkA04G437260 · TK1151

Cell membrane0.087

Rank 5 · TkA04G437260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450Peptidase_S1060-508 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G437260	`PF00450`	Peptidase_S10	60	508	2.3e-111	373.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C7Z9`	Arabidopsis thaliana	sp\|Q9C7Z9\|SCP18_ARATH Serine carboxypeptidase-like 18	45.900%	Swiss-Prot	Medium
`Q8H780`	Arabidopsis thaliana	sp\|Q8H780\|SCP13_ARATH Serine carboxypeptidase-like 13	42.800%	Swiss-Prot	Medium
`Q9SQX6`	Arabidopsis thaliana	sp\|Q9SQX6\|SCP7_ARATH Serine carboxypeptidase-like 7	42.700%	Swiss-Prot	Medium
`Q9CAU1`	Arabidopsis thaliana	sp\|Q9CAU1\|SCP3_ARATH Serine carboxypeptidase-like 3	43.100%	Swiss-Prot	Medium
`Q9C7D6`	Arabidopsis thaliana	sp\|Q9C7D6\|SCP17_ARATH Serine carboxypeptidase-like 17	38.100%	Swiss-Prot	Medium

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