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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G432540
Reference: TK1151 Chr: Chr04 Coordinates: 109062940-109069333 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3265 bp · TkA04G432540|TK1151|cDNA

GTTTCGACCACACCTACGGCATGAATATGACTTTAATTATGTCAAAACAACAACATATTGCAAGTTTGCAACTTTCTTAATTCAATGGTCGGTTTATAACGAAAATCTGTGGAGATGCTTAAAACCCTAGGTGAAATTTTGATGATGCGAAACCAATAATCGTTTTGAGGTGTAAAGAGAACAGTAACATTTGGAAGTTTGATTAATTAGTGGCTTGAATTGGAGACTCGATGATCAAACTGGAGAAATTGATCAGGTTG...

CDS

Download CDS FASTA

2454 bp · TkA04G432540|TK1151|CDS

ATGGCAATCGATATCAAAACCCTAAAGGATAGGTATATTGATTCTTGCAAAGCTTGTGAAACCATTCCTAATAAAGCTGTTCTCTCAGCTCTCTTTAAGGCTGAAGTTAAGAAATCCAATAATGAAGAGTCCACCTTTTTAATCTACTTAGATGATTTCAAATCCATCGACTTTCATCCACTTTACAATCTATTTCTCCAAATTGATCTATCAGAAATAGACTCAGTTGACATACTCCAAAAATCATCATGTTCATTAGA...

Protein

Download Protein FASTA

817 aa · TkA04G432540|TK1151|PROTEIN

MAIDIKTLKDRYIDSCKACETIPNKAVLSALFKAEVKKSNNEESTFLIYLDDFKSIDFHPLYNLFLQIDLSEIDSVDILQKSSCSLDGDSVLLLLHAINQKLRVVDLQDRTFGKDFLMGLSLGGMSCQILNLKFSHFRKINMIGKFIQIRTLNLDFSASLTNFGKDCFSCMPNLKSLSLCETKVSNLWTTSASLAKLPSLIELRFQSCLCCDDTRVCPRSFGVKADENTSPSSSSSSSILDRGFEKITPFLTTEENTSLF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G432540
TK1151 IDTkA04G432540
OH-1004 IDLXL04_038463
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G432540
LocationChr04:109062940-109069333 (-)
DescriptionSimilar to KATNB1: Katanin p80 WD40 repeat-containing subunit B1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g34280 May act as a substrate receptor of a CUL4-RING E3 ubiquitin- protein ligase (CRL4) complex involved in the negative regulation of cellular responses to ultraviolet-B (UV-B) illumination, likely in coordination with RUP1.
DWD HYPERSENSITIVE TO UV-B 1 is negatively involved in UV-B mediated cellular responses in Arabidopsis.2014 · DOI: 10.1007/s11103-014-0247-0
DHU1 negatively regulates UV-B signaling via its direct interaction with COP1 and RUP1.2017 · DOI: 10.1016/j.bbrc.2017.07.110

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038463 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007019 microtubule depolymerization Biological Process
GO:0010224 response to UV-B Biological Process
GO:0051013 microtubule severing Biological Process
GO:0051301 cell division Biological Process
GO:0071493 cellular response to UV-B Biological Process
GO:0000922 spindle pole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005813 centrosome Cellular Component
GO:0005819 spindle Cellular Component
KEGG gene cross-reference
ath:AT4G34280
gga:415631
mmu:69544
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.501
Rank 1 · TkA04G432540 · TK1151
Cytoplasm0.409
Rank 2 · TkA04G432540 · TK1151
Cell membrane0.073
Rank 3 · TkA04G432540 · TK1151
Mitochondrion0.067
Rank 4 · TkA04G432540 · TK1151
Lysosome / Vacuole0.045
Rank 5 · TkA04G432540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20919DHU1_N4-405 aa
PF12799LRR_4128-156 aa
PF14580LRR_9137-202 aa
PF13855LRR_8148-200 aa
PF12799LRR_4149-186 aa
PF12799LRR_4172-207 aa
PF14580LRR_9351-402 aa
PF12799LRR_4377-386 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G432540PF20919DHU1_N44053.1e-72244.6
TkA04G432540PF12799LRR_41281562.59.2
TkA04G432540PF14580LRR_91372022.4e-0524.7
TkA04G432540PF13855LRR_81482000.0003221.1
TkA04G432540PF12799LRR_41491862.59.2
TkA04G432540PF12799LRR_41722072.59.2
TkA04G432540PF14580LRR_93514022.4e-0524.7
TkA04G432540PF12799LRR_43773862.59.2
TkA04G432540PF29037DSE1_N4765564.2e-0523.5
TkA04G432540PF23383Beta-prop_IFT140_1st4765506.5e-0522.5
TkA04G432540PF23098Beta-prop_NOL10_N4806505.9e-1039.5
TkA04G432540PF23419WD40_RFWD34815578.2e-0832.7
TkA04G432540PF25460Beta-prop_Aladin4815470.03114.1
TkA04G432540PF24814WD40_Prp194836862e-1557.3
TkA04G432540PF23414Beta-prop_EML_24835548.2e-0832.7
TkA04G432540PF25175Beta-prop_WDR54855571.3e-1868.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GYY7Arabidopsis thalianasp|Q8GYY7|DHU1_ARATH Protein DWD HYPERSENSITIVE TO UV-B 150.100%Swiss-ProtHigh

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