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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G415680
Reference: TK1151 Chr: Chr04 Coordinates: 104694646-104696581 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1800 bp · TkA04G415680|TK1151|cDNA

AGAAAAGCCAACTCACTTTATGTAATTTTCTTTAAATTCACCGCAAGCACACATTCTCTCTCTCTCTCTCTCTCACACACACACAGATATATGTCTTTCAGCTTAAGTTTCTCAGTTTTCTTACCTTCGCTGCGCGTTTTCACAGCTACAAAATCTCCCAAACCTTCCGCTTCCATGGCGGTTACAAAAAGATAAACTAAAAACATTGCTTCCCGCGTTTTCCATCCCGTTTTAATTCATGCGTGCAAGCTAAAGCCCCC...

CDS

Download CDS FASTA

1146 bp · TkA04G415680|TK1151|CDS

ATGGGAGCGCACGTTAGCAAGAGATCTGCTGCAGCTACCTCTTCCGACTCCCCCGCTATCCCTTTGAAAGACACACAACAAATCATTACAGAGCTTAACGCATATGAAGCAGCTTGCAGATCTGATACCGATTTGCAATCGTTTGACGCCATGCTACATGCTCGCGCAAACAACGTGATCAATACTTTGGCTTCGGGAGTTGAAATCCGTGCTTTATCTTTCGACACTTTAAAAGAACTCACTGAGTGCCTGTTAGAAAT...

Protein

Download Protein FASTA

381 aa · TkA04G415680|TK1151|PROTEIN

MGAHVSKRSAAATSSDSPAIPLKDTQQIITELNAYEAACRSDTDLQSFDAMLHARANNVINTLASGVEIRALSFDTLKELTECLLEMNQEVVKVILHCKKDIWKNQELFELVEEYFENSLQTLDFCAALDKCLKRVRDSQLLILVALQHFDEDGDEGVEENKYEKTLEDLKNFKDAGDPFTEEFFKIFHSVYRQQLVMLEKLQTKKTKLDKKVKYLQTWRKLSSVIFVATFTAVLICSVVAAAMAAPPVAAALAAATAIP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G415680
TK1151 IDTkA04G415680
OH-1004 IDLXL04_013476
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)54.400
Protein coverage (%)TK1151 91.076 / OH-1004 96.338
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G415680
LocationChr04:104694646-104696581 (+)
DescriptionSimilar to At4g34320: UPF0496 protein At4g34320
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g34320 UPF0496 protein At4g34320. No verified direct reference in this release
At2g18630 UPF0496 protein At2g18630. No verified direct reference in this release
At4g34330 UPF0496 protein At4g34330. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XDK8 UPF0496 protein 1. No verified direct reference in this release
Os03g0199100 UPF0496 protein 1. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013476 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0016020 membrane Cellular Component
KEGG gene cross-reference
ath:AT2G18630
ath:AT4G34320
ath:AT5G66675
dosa:Os03g0199100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.545
Rank 1 · TkA04G415680 · TK1151
Cytoplasm0.277
Rank 2 · TkA04G415680 · TK1151
Nucleus0.169
Rank 3 · TkA04G415680 · TK1151
Endoplasmic reticulum0.092
Rank 4 · TkA04G415680 · TK1151
Lysosome / Vacuole0.087
Rank 5 · TkA04G415680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18663Pallilysin24-78 aa
PF24829Phage_connect_237-100 aa
PF23338PTHB1_hp40-74 aa
PF05633ROH1-like42-153 aa
PF05055DUF67745-374 aa
PF25746Phage_Repressor_c59-221 aa
PF29547Ice1_1st106-187 aa
PF23338PTHB1_hp106-140 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G415680PF18663Pallilysin24780.0008120.1
TkA04G415680PF24829Phage_connect_2371000.03715.0
TkA04G415680PF23338PTHB1_hp40740.4911.6
TkA04G415680PF05633ROH1-like421536.5e-0832.7
TkA04G415680PF05055DUF677453741.7e-129432.3
TkA04G415680PF25746Phage_Repressor_c592210.02414.6
TkA04G415680PF29547Ice1_1st1061870.001818.8
TkA04G415680PF23338PTHB1_hp1061400.4911.6
TkA04G415680PF24829Phage_connect_21441700.03715.0
TkA04G415680PF05633ROH1-like1492006.5e-0832.7
TkA04G415680PF24423OVT11641870.09213.9
TkA04G415680PF23338PTHB1_hp1702260.4911.6
TkA04G415680PF05633ROH1-like2293696.5e-0832.7
TkA04G415680PF18663Pallilysin2663160.0008120.1
TkA04G415680PF24423OVT12963550.09213.9
TkA04G415680PF29547Ice1_1st3363660.001818.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SYZ7Arabidopsis thalianasp|Q9SYZ7|U496A_ARATH UPF0496 protein At4g3432071.100%Swiss-ProtHigh
Q56XQ0Arabidopsis thalianasp|Q56XQ0|U496I_ARATH UPF0496 protein At2g1863048.400%Swiss-ProtMedium
Q9SYZ8Arabidopsis thalianasp|Q9SYZ8|U496B_ARATH UPF0496 protein At4g3433056.100%Swiss-ProtHigh
A2XDK8Oryza sativa subsp. indicasp|A2XDK8|U496A_ORYSI UPF0496 protein 161.100%Swiss-ProtHigh
Q10QE9Oryza sativa subsp. japonicasp|Q10QE9|U496A_ORYSJ UPF0496 protein 161.100%Swiss-ProtHigh

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