TkA04G333930 | RubberDandelionOmics

Gene overview

TkA04G333930

Reference: TK1151 Chr: Chr04 Coordinates: 84314236-84316260 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1033 bp · TkA04G333930|TK1151|cDNA

GGCTAAGGGATAAATCCAAAACTTGTGGGTTGGGCCTCTATGGTCCAGGCCGCCAGCCGCCAGCCGCAAACAGCATATATATGTGACCGGGAATTGGGAAAACGGGCGGTGGATTATATCTCGTCTCACATACAATTCGGTCACTCTTCTTCCACACCAAAATCGATTCTAGGGTTTTTTTTTCTGATAAGATCAGTCTACTGAAACTGTACTAAATTTAAGCTCTGCGAGCTAAGAAATGGGTCGGATTTTTTTGGTGG...

CDS

Download CDS FASTA

384 bp · TkA04G333930|TK1151|CDS

ATGGGTCGGATTTTTTTGGTGGAGTTGGAGGGAAGAACTTACAAATGCAAGTTCTGCAAAACAAATCTAGCCCTTGCCGACAGTGTCATCTCCCGGGGTTTTCATTGCCGCAGAGGAAAAGCATATCTGTTCAGTAACGTGGTGAACGTGACAGCTGGCGCTATCGAGGAACGGATGATGCTTTCAGGATTGCACACGGTTACAGATATATTTTGTGTATGTTGTGGACAAATTGTTGGATGGAAATACGAGACGGCACA...

Protein

Download Protein FASTA

127 aa · TkA04G333930|TK1151|PROTEIN

MGRIFLVELEGRTYKCKFCKTNLALADSVISRGFHCRRGKAYLFSNVVNVTAGAIEERMMLSGLHTVTDIFCVCCGQIVGWKYETAHEQSQKYKEGKFVLERGRIIDGLDSEFYIDTRPSSSDAEEA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G333930`
TK1151 ID	TkA04G333930
OH-1004 ID	LXL04_037686
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G333930

Location Chr04:84314236-84316260 (+)

Description Similar to At5g53940: Protein yippee-like At5g53940

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g53940`	Protein yippee-like At5g53940.	No verified direct reference in this release
`At3g08990`	Protein yippee-like At3g08990.	No verified direct reference in this release
`At3g11230`	Protein yippee-like At3g11230.	No verified direct reference in this release
`At3g55890`	Protein yippee-like At3g55890.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037686 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000151 ubiquitin ligase complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G08990

ath:AT3G11230

ath:AT3G55890

ath:AT5G53940

sot:102577430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.729

Rank 1 · TkA04G333930 · TK1151

Cytoplasm0.469

Rank 2 · TkA04G333930 · TK1151

Cell membrane0.037

Rank 3 · TkA04G333930 · TK1151

Mitochondrion0.032

Rank 4 · TkA04G333930 · TK1151

Endoplasmic reticulum0.029

Rank 5 · TkA04G333930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25165DUF782810-27 aa

PF24046At4g0833012-28 aa

PF25169DUF783012-35 aa

PF03226Yippee-Mis1814-105 aa

PF25169DUF783055-79 aa

PF24046At4g0833065-94 aa

PF25165DUF782868-89 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G333930	`PF25165`	DUF7828	10	27	0.19	12.1
TkA04G333930	`PF24046`	At4g08330	12	28	0.027	15.2
TkA04G333930	`PF25169`	DUF7830	12	35	0.075	13.6
TkA04G333930	`PF03226`	Yippee-Mis18	14	105	7.7e-12	46.0
TkA04G333930	`PF25169`	DUF7830	55	79	0.075	13.6
TkA04G333930	`PF24046`	At4g08330	65	94	0.027	15.2
TkA04G333930	`PF25165`	DUF7828	68	89	0.19	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FN32`	Arabidopsis thaliana	sp\|Q9FN32\|YIPL7_ARATH Protein yippee-like At5g53940	69.000%	Swiss-Prot	High
`Q9SR97`	Arabidopsis thaliana	sp\|Q9SR97\|YIPL1_ARATH Protein yippee-like At3g08990	59.400%	Swiss-Prot	High
`Q9C777`	Arabidopsis thaliana	sp\|Q9C777\|YIPL3_ARATH Protein yippee-like At3g11230	56.800%	Swiss-Prot	High
`Q9LY56`	Arabidopsis thaliana	sp\|Q9LY56\|YIPL4_ARATH Protein yippee-like At3g55890	60.400%	Swiss-Prot	High

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