LXL04_037686 | RubberDandelionOmics

Gene overview

LXL04_037686

Reference: OH-1004 Chr: Chr09 Coordinates: 18246012-18247388 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

384 bp · LXL04_037686|LXL04_037686|OH1004|cDNA

ATGGGTCGGATTTTTTTGGTGGAGTTGGAGGGAAGAACTTACAAATGCAAGTTCTGCAAAACAAATCTAGCCCTTGCCGACAGTGTCATCTCCCGGGGTTTTCATTGCCGCAGAGGAAAAGCATATCTGTTCAGTAACGTGGTGAACGTGACAGCTGGCGCTATCGAGGAACGGATGATGCTTTCAGGATTGCACACGGTTACAGATATATTTTGTGTATGTTGTGGACAAATTGTTGGATGGAAATACGAGACGGCACA...

CDS

Download CDS FASTA

384 bp · LXL04_037686|LXL04_037686|OH1004|CDS

ATGGGTCGGATTTTTTTGGTGGAGTTGGAGGGAAGAACTTACAAATGCAAGTTCTGCAAAACAAATCTAGCCCTTGCCGACAGTGTCATCTCCCGGGGTTTTCATTGCCGCAGAGGAAAAGCATATCTGTTCAGTAACGTGGTGAACGTGACAGCTGGCGCTATCGAGGAACGGATGATGCTTTCAGGATTGCACACGGTTACAGATATATTTTGTGTATGTTGTGGACAAATTGTTGGATGGAAATACGAGACGGCACA...

Protein

Download Protein FASTA

127 aa · LXL04_037686|LXL04_037686|OH1004|PROTEIN

MGRIFLVELEGRTYKCKFCKTNLALADSVISRGFHCRRGKAYLFSNVVNVTAGAIEERMMLSGLHTVTDIFCVCCGQIVGWKYETAHEQSQKYKEGKFVLERGRIIDGLDSEFYIDTRPSSSDAEEA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037686`
TK1151 ID	TkA04G333930
OH-1004 ID	LXL04_037686
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037686

Location Chr09:18246012-18247388 (-)

Description Similar to At5g53940: Protein yippee-like At5g53940

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g53940`	Protein yippee-like At5g53940.	No verified direct reference in this release
`At3g11230`	Protein yippee-like At3g11230.	No verified direct reference in this release
`At3g08990`	Protein yippee-like At3g08990.	No verified direct reference in this release
`At3g55890`	Protein yippee-like At3g55890.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037686 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000151 ubiquitin ligase complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G08990

ath:AT3G11230

ath:AT3G55890

ath:AT5G53940

sot:102577430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.729

Rank 1 · LXL04_037686 · OH-1004

Cytoplasm0.469

Rank 2 · LXL04_037686 · OH-1004

Cell membrane0.037

Rank 3 · LXL04_037686 · OH-1004

Mitochondrion0.032

Rank 4 · LXL04_037686 · OH-1004

Endoplasmic reticulum0.029

Rank 5 · LXL04_037686 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03226.22Yippee-Mis1814-105 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037686	`PF03226.22`	Yippee-Mis18	14	105	7.7e-12	46.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FN32`	Arabidopsis thaliana	Protein yippee-like At5g53940	68.992%	Swiss-Prot	strong database homology
`Q9C777`	Arabidopsis thaliana	Protein yippee-like At3g11230	56.589%	Swiss-Prot	strong database homology
`Q9SR97`	Arabidopsis thaliana	Protein yippee-like At3g08990	52.344%	Swiss-Prot	strong database homology
`Q9LY56`	Arabidopsis thaliana	Protein yippee-like At3g55890	55.118%	Swiss-Prot	strong database homology

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