TkA04G295030 | RubberDandelionOmics

Gene overview

TkA04G295030

Reference: TK1151 Chr: Chr04 Coordinates: 74700399-74700749 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

351 bp · TkA04G295030|TK1151|cDNA

TCAACACGAATTGACGAAAGTGAGATCTATACACTCGATGGTATAAGAAGTTCTTTAATTCGACAAGAAGATAGCATTATATTCAGCTTAGTGGAAAGAGCTCAATTTTGTTACAATGAAGATACATACGACCCCAATGCTTTCTTCATGGACGGATTCAAAGGTGCTTTAGTCGAATTCATGGTCAAAGAAACCGAAAAGATTTATGCCCAGGTAACTTTAACAGTTAACAATTTAAAAATCGATCTTTTTGTCATAAA...

CDS

Download CDS FASTA

351 bp · TkA04G295030|TK1151|CDS

TCAACACGAATTGACGAAAGTGAGATCTATACACTCGATGGTATAAGAAGTTCTTTAATTCGACAAGAAGATAGCATTATATTCAGCTTAGTGGAAAGAGCTCAATTTTGTTACAATGAAGATACATACGACCCCAATGCTTTCTTCATGGACGGATTCAAAGGTGCTTTAGTCGAATTCATGGTCAAAGAAACCGAAAAGATTTATGCCCAGGTAACTTTAACAGTTAACAATTTAAAAATCGATCTTTTTGTCATAAA...

Protein

Download Protein FASTA

116 aa · TkA04G295030|TK1151|PROTEIN

STRIDESEIYTLDGIRSSLIRQEDSIIFSLVERAQFCYNEDTYDPNAFFMDGFKGALVEFMVKETEKIYAQVTLTVNNLKIDLFVIKITSSTMDEDMVYWQVFVKTEVSSKTEEDK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G295030`
TK1151 ID	TkA04G295030
OH-1004 ID	LXL04_006567
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	95.800
Protein coverage (%)	TK1151 61.207 / OH-1004 22.257 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G295030

Location Chr04:74700399-74700749 (+)

Description Similar to CM1: Chorismate mutase 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g29200`	May play a role in chloroplast biogenesis.	No verified direct reference in this release
`At1g69370`	May play a role in chloroplast biogenesis.	No verified direct reference in this release
`At5g10870`	Chorismate mutase 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_006567 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000162 L-tryptophan biosynthetic process Biological Process

GO:0008652 amino acid biosynthetic process Biological Process

GO:0009073 aromatic amino acid family biosynthetic process Biological Process

GO:0010597 green leaf volatile biosynthetic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0046417 chorismate metabolic process Biological Process

GO:1901747 prephenate(2-) biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

KEGG gene cross-reference

ath:AT1G69370

ath:AT3G29200

ath:AT5G10870

zma:100272431

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.513

Rank 1 · TkA04G295030 · TK1151

Cytoplasm0.493

Rank 2 · TkA04G295030 · TK1151

Mitochondrion0.065

Rank 3 · TkA04G295030 · TK1151

Cell membrane0.057

Rank 4 · TkA04G295030 · TK1151

Endoplasmic reticulum0.049

Rank 5 · TkA04G295030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22966INTS7_C_plants51-102 aa

PF30759GtfB_3rd56-108 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G295030	`PF22966`	INTS7_C_plants	51	102	0.099	12.9
TkA04G295030	`PF30759`	GtfB_3rd	56	108	0.084	13.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P42738`	Arabidopsis thaliana	sp\|P42738\|CM1_ARATH Chorismate mutase 1, chloroplastic	72.900%	Swiss-Prot	Medium
`Q9C544`	Arabidopsis thaliana	sp\|Q9C544\|CM3_ARATH Chorismate mutase 3, chloroplastic	68.600%	Swiss-Prot	Medium
`Q9S7H4`	Arabidopsis thaliana	sp\|Q9S7H4\|CM2_ARATH Chorismate mutase 2	48.500%	Swiss-Prot	Medium

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