TkA04G255370 | RubberDandelionOmics

Gene overview

TkA04G255370

Reference: TK1151 Chr: Chr04 Coordinates: 64579224-64581020 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

828 bp · TkA04G255370|TK1151|cDNA

ATGGTTTGTGGTAAGGTAGAAAGTATGGATGGATTATTTGATGTAGATATCGTGGACTCCATACACCCTTCTACGCCTTTTGCATTGCTTCATGAAGGCCTTTTACGCCTTTCTAAAGTGAAGAGGAACGTGGAGGGGGACGAGAATTCGAAGTATTTCCATGGGTTGTTAAATAGAAAAAGACGTCAAAATGCGATAAAAGGGGTCAAGGTGGACGGCGTTTGGGAGGAGGATGTTGTGGTGGTTAAAAGAGTGTTCTT...

CDS

Download CDS FASTA

828 bp · TkA04G255370|TK1151|CDS

ATGGTTTGTGGTAAGGTAGAAAGTATGGATGGATTATTTGATGTAGATATCGTGGACTCCATACACCCTTCTACGCCTTTTGCATTGCTTCATGAAGGCCTTTTACGCCTTTCTAAAGTGAAGAGGAACGTGGAGGGGGACGAGAATTCGAAGTATTTCCATGGGTTGTTAAATAGAAAAAGACGTCAAAATGCGATAAAAGGGGTCAAGGTGGACGGCGTTTGGGAGGAGGATGTTGTGGTGGTTAAAAGAGTGTTCTT...

Protein

Download Protein FASTA

275 aa · TkA04G255370|TK1151|PROTEIN

MVCGKVESMDGLFDVDIVDSIHPSTPFALLHEGLLRLSKVKRNVEGDENSKYFHGLLNRKRRQNAIKGVKVDGVWEEDVVVVKRVFFEHFRDKFKPFHPLIQQTQDSRFKKLTEEMVHRIDRLISIEEVKNAVWECGSDKAPGPDGLNFRFIKKYWEVVKIDIMTFVEDFFHKSFIPSGCNSSIITLIPKVSSPMGVGEYRPISLIGVQYKIVAKILALRLAEVAGGVVSQEQTTFIKGRQILDGPMLVNEVVHWAKKKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G255370`
TK1151 ID	TkA04G255370
OH-1004 ID	LXL04_036948
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	65.400
Protein coverage (%)	TK1151 87.273 / OH-1004 11.753 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA04G255370`
Location	Chr04:64579224-64581020 (+)
Description	Similar to SULTR3;1: Sulfate transporter 3.1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_036948` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0055085 transmembrane transport Biological Process GO:1902358 sulfate transmembrane transport Biological Process GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0008271 secondary active sulfate transmembrane transporter activity Molecular Function GO:0015116 sulfate transmembrane transporter activity Molecular Function GO:0015293 symporter activity Molecular Function GO:0022857 transmembrane transporter activity Molecular Function
KEGG gene cross-reference	ath:AT3G51895 ath:AT4G02700 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.688

Rank 1 · TkA04G255370 · TK1151

Nucleus0.407

Rank 2 · TkA04G255370 · TK1151

Cell membrane0.039

Rank 3 · TkA04G255370 · TK1151

Endoplasmic reticulum0.039

Rank 4 · TkA04G255370 · TK1151

Mitochondrion0.038

Rank 5 · TkA04G255370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00078RVT_1152-164 aa

PF00078RVT_1188-273 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G255370	`PF00078`	RVT_1	152	164	6.8e-10	39.9
TkA04G255370	`PF00078`	RVT_1	188	273	6.8e-10	39.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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