LXL04_036948 | RubberDandelionOmics

Gene overview

LXL04_036948

Reference: OH-1004 Chr: Chr08 Coordinates: 50751350-50772887 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

6129 bp · LXL04_036948|LXL04_036948|OH1004|cDNA

ATGGGTACGGGAGAATACGACTACCCAAAATCGAATTTCGAACAGCCGCCTCACAAAGTCGCCATTCCGCCGCCACAACCGTTCATAAAATCGTTGAAGAACACCGTGAAAGAAACTTTTTTTCCCGACGACCCACTCCGGCAGTTCAAAAACCAGCCGCCGTCGCGAAAATTTGTACTTGGAATTCAGTATTTCTTCCCCATTTTCGACTGGGGGTCCCGTTATACTTTAAGTTTCTTCAAATCCGACATAATCGCCGG...

CDS

Download CDS FASTA

6129 bp · LXL04_036948|LXL04_036948|OH1004|CDS

ATGGGTACGGGAGAATACGACTACCCAAAATCGAATTTCGAACAGCCGCCTCACAAAGTCGCCATTCCGCCGCCACAACCGTTCATAAAATCGTTGAAGAACACCGTGAAAGAAACTTTTTTTCCCGACGACCCACTCCGGCAGTTCAAAAACCAGCCGCCGTCGCGAAAATTTGTACTTGGAATTCAGTATTTCTTCCCCATTTTCGACTGGGGGTCCCGTTATACTTTAAGTTTCTTCAAATCCGACATAATCGCCGG...

Protein

Download Protein FASTA

2042 aa · LXL04_036948|LXL04_036948|OH1004|PROTEIN

MGTGEYDYPKSNFEQPPHKVAIPPPQPFIKSLKNTVKETFFPDDPLRQFKNQPPSRKFVLGIQYFFPIFDWGSRYTLSFFKSDIIAGITIASLAIPQGISYAKLANLPPILGLCKQSLTLFRHSSFIPPLVYAMMGSSKDLAVGTVAVASLLTGSMLGKEVNASENPKLYLQLAFMATFFAGVLQASLGIFRLGFIVDFLSHATIVGFMGGAATVVCLQQLKGILGLEHFTHGTDLVSVLRSVFTQTHQSTKRPKLFWIS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036948`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036948

Location Chr08:50751350-50772887 (+)

Description Similar to SULTR3;1: Sulfate transporter 3.1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51895`	H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation.	No verified direct reference in this release
`At4g02700`	H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation.	No verified direct reference in this release
`At1g23090`	H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation.	No verified direct reference in this release
`At3g15990`	H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation.	No verified direct reference in this release
`At5g19600`	H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036948 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0055085 transmembrane transport Biological Process

GO:1902358 sulfate transmembrane transport Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008271 secondary active sulfate transmembrane transporter activity Molecular Function

GO:0015116 sulfate transmembrane transporter activity Molecular Function

GO:0015293 symporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G51895

ath:AT4G02700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.499

Rank 1 · LXL04_036948 · OH-1004

Endoplasmic reticulum0.198

Rank 2 · LXL04_036948 · OH-1004

Cytoplasm0.134

Rank 3 · LXL04_036948 · OH-1004

Lysosome / Vacuole0.128

Rank 4 · LXL04_036948 · OH-1004

Golgi apparatus0.063

Rank 5 · LXL04_036948 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00916.27Sulfate_transp80-447 aa

PF01740.27STAS466-555 aa

PF00916.27Sulfate_transp735-1074 aa

PF01740.27STAS1077-1165 aa

PF13359.13DDE_Tnp_41400-1550 aa

PF00078.33RVT_11943-2038 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036948	`PF00916.27`	Sulfate_transp	80	447	1.4e-224	745.6
LXL04_036948	`PF01740.27`	STAS	466	555	3.6e-32	111.0
LXL04_036948	`PF00916.27`	Sulfate_transp	735	1074	1.4e-224	745.6
LXL04_036948	`PF01740.27`	STAS	1077	1165	3.6e-32	111.0
LXL04_036948	`PF13359.13`	DDE_Tnp_4	1400	1550	1e-11	45.4
LXL04_036948	`PF00078.33`	RVT_1	1943	2038	4.2e-13	50.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SV13`	Arabidopsis thaliana	Sulfate transporter 3.1	74.187%	Swiss-Prot	weak database homology
`O04289`	Arabidopsis thaliana	Sulfate transporter 3.2	68.354%	Swiss-Prot	weak database homology
`Q9SXS2`	Arabidopsis thaliana	Probable sulfate transporter 3.3	58.140%	Swiss-Prot	weak database homology
`Q9LW86`	Arabidopsis thaliana	Probable sulfate transporter 3.4	56.448%	Swiss-Prot	weak database homology
`Q94LW6`	Arabidopsis thaliana	Probable sulfate transporter 3.5	46.965%	Swiss-Prot	weak database homology

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