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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G188820
Reference: TK1151 Chr: Chr04 Coordinates: 48669035-48679279 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4378 bp · TkA04G188820|TK1151|cDNA

GTAAAGTTAGTTTAAAAAATAAATAAACTAATAATCATCTTTATATACCAAAAAAACACCCCATTAAAGTGTGGGAGGTAGAAAATTTGTGCTTGGCATTTGGCCATAATTGATAATTCCCTTCCTATGTGGGAAGAGATGGTTCTGAATTTGTCTGTTTAGTCTTCTGAAGAAGAACCAGAGGGACCAATAAGTTTTGGAATTTGTTTCACGAGAACACATGCTACCTCTTCTCCATAATACTCCCTTCCTCTTCTTAT...

CDS

Download CDS FASTA

4251 bp · TkA04G188820|TK1151|CDS

ATGGCGTCCACCTCTTCTTCTTCTTCATCTTCTTCTTCGTCTTCTCATCGCCATGAATCCATAGACCCTAAGCTTTTAAGATTACTCGTTTCTTTGATCAATGACCACATTTACTCGTTCTTATCCAACCACAAGTCCAGAAAGATACTACACGCTATATGCTCCTCAAATCTCAAGTTTCACGAGCAGGATTTCTTCGACTTCTCGGAACAATCAGTACTCTCGAATTTTTACTGGGGTATTCAGAATGTAGAAGCTGC...

Protein

Download Protein FASTA

1416 aa · TkA04G188820|TK1151|PROTEIN

MASTSSSSSSSSSSSHRHESIDPKLLRLLVSLINDHIYSFLSNHKSRKILHAICSSNLKFHEQDFFDFSEQSVLSNFYWGIQNVEAAVQSKCPEDIKPKLQRAEKMLQAPALLNEDGTTAGVSNSYLVCYAYFYLSVVRKLQRDELQVSVHFLQALVVSPAVVRVELAPELYRAIVESCIVPLRPEFRNEVEESEGVKWGARSYKAWLMYHQVISYGQSPLLMKEPDENLLEIRNMNACSTSSSNSYEHMHHLHQLRMHQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G188820
TK1151 IDTkA04G188820
OH-1004 IDLXL04_029887
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 86.370 / OH-1004 99.593
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G188820
LocationChr04:48669035-48679279 (+)
DescriptionSimilar to CERBERUS: Putative E3 ubiquitin-protein ligase LIN-1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g50850 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). No verified direct reference in this release
At4g24290 Negatively controls the salicylic acid (SA)-mediated pathway of programmed cell death in plant immunity. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0536000 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029887 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009877 nodulation Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
mtr:11418360
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.413
Rank 1 · TkA04G188820 · TK1151
Nucleus0.355
Rank 2 · TkA04G188820 · TK1151
Cell membrane0.249
Rank 3 · TkA04G188820 · TK1151
Endoplasmic reticulum0.080
Rank 4 · TkA04G188820 · TK1151
Golgi apparatus0.073
Rank 5 · TkA04G188820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23568ARM_LIN28-192 aa
PF23654ARM_LIN_2nd403-565 aa
PF23628ARM_LIN_C568-922 aa
PF25174Beta-prop_THOC3569-604 aa
PF23654ARM_LIN_2nd717-750 aa
PF23414Beta-prop_EML_2776-789 aa
PF24807WD40_CDC20-Fz907-1036 aa
PF00400WD40940-973 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G188820PF23568ARM_LIN281925.4e-2795.3
TkA04G188820PF23654ARM_LIN_2nd4035656.5e-50169.6
TkA04G188820PF23628ARM_LIN_C5689223.8e-60204.5
TkA04G188820PF25174Beta-prop_THOC35696042.9e-0937.1
TkA04G188820PF23654ARM_LIN_2nd7177506.5e-50169.6
TkA04G188820PF23414Beta-prop_EML_27767890.001518.7
TkA04G188820PF24807WD40_CDC20-Fz90710362.6e-0937.5
TkA04G188820PF00400WD409409733.1e-1040.8
TkA04G188820PF25048Beta-prop_TEP1_C9519762.2e-0525.1
TkA04G188820PF21031WDR5495110210.001718.3
TkA04G188820PF23409Beta-prop_EML95710531.4e-0732.0
TkA04G188820PF25391WD40_Gbeta95910600.05413.2
TkA04G188820PF25173Beta-prop_WDR3_1st96011002.4e-1350.9
TkA04G188820PF23381Beta-prop_IFT122_1st96012221.8e-1247.9
TkA04G188820PF25174Beta-prop_THOC396012012.9e-0937.1
TkA04G188820PF25172Beta-prop_WDR3_2nd96010203.6e-0833.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q38799Arabidopsis thalianasp|Q38799|ODPB1_ARATH Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial80.600%Swiss-ProtLow
Q9STW5Arabidopsis thalianasp|Q9STW5|MACP2_ARATH MACPF domain-containing protein At4g2429071.400%Swiss-ProtLow
Q6Z1G7Oryza sativa subsp. japonicasp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial80.600%Swiss-ProtLow

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