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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G161610
Reference: TK1151 Chr: Chr04 Coordinates: 41727514-41729599 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2000 bp · TkA04G161610|TK1151|cDNA

GTACCCCCTGCTTAAACCCTCTTAAAGAACCCTAATCATTTTTTCTCAAAGTTTTAGCAAATGGCTCTTTCGAAACCAACTTTCTTGAATCAACTCAAGTTGCTGGTGAGAACCCACCACCACCACCACCCTCTCCGCCCTGCCGTCGTATCTCTCCGCCATTTATCATTTGCCACTCCAGAAGACGCCGCCGCAGAACGTCGCCGCCGAAAACGTCGTCTCCGTATCGAACCCCCTCTAAACGCCCTCCGCTCCAATAC...

CDS

Download CDS FASTA

1824 bp · TkA04G161610|TK1151|CDS

ATGGCTCTTTCGAAACCAACTTTCTTGAATCAACTCAAGTTGCTGGTGAGAACCCACCACCACCACCACCCTCTCCGCCCTGCCGTCGTATCTCTCCGCCATTTATCATTTGCCACTCCAGAAGACGCCGCCGCAGAACGTCGCCGCCGAAAACGTCGTCTCCGTATCGAACCCCCTCTAAACGCCCTCCGCTCCAATACCCAATCCCAGCCTCGCCCTACCCCGACCCCTAATGCAAACCCTAACGCCCCAAAAATCCC...

Protein

Download Protein FASTA

607 aa · TkA04G161610|TK1151|PROTEIN

MALSKPTFLNQLKLLVRTHHHHHPLRPAVVSLRHLSFATPEDAAAERRRRKRRLRIEPPLNALRSNTQSQPRPTPTPNANPNAPKIPEHVSVLTGKRLELHNRILKLIRENDLQEAVLLTRHSVYSNCKPTIFTCNAVMAACLRQSKYADLLNLHRFITQAAIAANIITYNLIIQTYMDCRKTDTAMEHYKQLIDNAPFEPNTTTYRIIVKGLVDNDKLDKALEIKNDMLSKGFEADPIVYSHLMSGQAKNNNPDEIFNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G161610
TK1151 IDTkA04G161610
OH-1004 IDLXL04_035164
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 97.694 / OH-1004 97.533
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G161610
LocationChr04:41727514-41729599 (-)
DescriptionSimilar to EMB1796: Pentatricopeptide repeat-containing protein At3g49240, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g49240 May play a role in embryogenesis. No verified direct reference in this release
At1g10270 May function as a transcriptional regulator essential for early embryogenesis.
Arabidopsis GLUTAMINE-RICH PROTEIN23 is essential for early embryogenesis and encodes a novel nuclear PPR motif protein that interacts with RNA polymerase II subunit III.2006 · DOI: 10.1105/tpc.105.039495

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035164 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009960 endosperm development Biological Process
GO:0051301 cell division Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G09900
ath:AT1G10270
ath:AT1G63080
ath:AT3G49240
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.816
Rank 1 · TkA04G161610 · TK1151
Plastid0.130
Rank 2 · TkA04G161610 · TK1151
Nucleus0.050
Rank 3 · TkA04G161610 · TK1151
Cytoplasm0.036
Rank 4 · TkA04G161610 · TK1151
Cell membrane0.015
Rank 5 · TkA04G161610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13812PPR_392-112 aa
PF13041PPR_2111-143 aa
PF17177PPR_long114-269 aa
PF14733ACDC116-193 aa
PF13812PPR_3124-177 aa
PF29978ATP18_TPR124-143 aa
PF12854PPR_1127-134 aa
PF29070MSC6_N130-262 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G161610PF13812PPR_3921122.2e-2692.4
TkA04G161610PF13041PPR_21111431.2e-54182.9
TkA04G161610PF17177PPR_long1142694.6e-1659.5
TkA04G161610PF14733ACDC1161930.2112.6
TkA04G161610PF13812PPR_31241772.2e-2692.4
TkA04G161610PF29978ATP18_TPR1241430.03114.9
TkA04G161610PF12854PPR_11271342.4e-33114.3
TkA04G161610PF29070MSC6_N1302622.7e-2590.0
TkA04G161610PF01535PPR1331483.3e-46153.0
TkA04G161610PF23276TPR_241352639e-1349.0
TkA04G161610PF08579RPM21412150.5411.4
TkA04G161610PF12921ATP131612300.03914.6
TkA04G161610PF13812PPR_31622152.2e-2692.4
TkA04G161610PF12854PPR_11651872.4e-33114.3
TkA04G161610PF13041PPR_21662141.2e-54182.9
TkA04G161610PF01535PPR1681953.3e-46153.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M3A8Arabidopsis thalianasp|Q9M3A8|PP273_ARATH Pentatricopeptide repeat-containing protein At3g49240, mitochondrial55.300%Swiss-ProtHigh
Q9SY69Arabidopsis thalianasp|Q9SY69|PPR29_ARATH Pentatricopeptide repeat-containing protein At1g1027043.800%Swiss-ProtLow

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