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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_035164
Reference: OH-1004 Chr: Chr08 Coordinates: 16042004-16043830 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1827 bp · LXL04_035164|LXL04_035164|OH1004|cDNA

ATGGCTCTTTCGAAACCAACTTTCTTGAATCAACTCAAATTGCTGGTCAGAAcccatcaccaccaccaccctcTCCGCCCTGCCGTCGTATCTCTCCGCCATTTATCATTTGCCACTCCAGAAGACGCCGCCGCAGAACGTCGCCGCCGAAAACGTCGTCTCCGTATCGAACCCCCTCTAAACGCCCTCCGCTCCAATACCCAATCCCAGCCTCGCCCTACCCCGACCCCTAATGCAAACCCTAACGCCCCAAAAATCCC...

CDS

Download CDS FASTA

1827 bp · LXL04_035164|LXL04_035164|OH1004|CDS

ATGGCTCTTTCGAAACCAACTTTCTTGAATCAACTCAAATTGCTGGTCAGAACCCATCACCACCACCACCCTCTCCGCCCTGCCGTCGTATCTCTCCGCCATTTATCATTTGCCACTCCAGAAGACGCCGCCGCAGAACGTCGCCGCCGAAAACGTCGTCTCCGTATCGAACCCCCTCTAAACGCCCTCCGCTCCAATACCCAATCCCAGCCTCGCCCTACCCCGACCCCTAATGCAAACCCTAACGCCCCAAAAATCCC...

Protein

Download Protein FASTA

608 aa · LXL04_035164|LXL04_035164|OH1004|PROTEIN

MALSKPTFLNQLKLLVRTHHHHHPLRPAVVSLRHLSFATPEDAAAERRRRKRRLRIEPPLNALRSNTQSQPRPTPTPNANPNAPKIPEHVSVLTGKRLELHNRILKLIRENDLQEAVLLTRHSVYSNCKPTIFTCNAVMAACLRQSKYADLLNLHRFITQAAIAANIITYNLIIQTYMDCRKTDTAMEHYKQLIDNAPFEPNTTTYRIIVKGLVDNDKLDKALEIKNDMLSKGFEADPIVYSHLMSGQAKNNNPDEIFNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDLXL04_035164
TK1151 IDTkA04G161610
OH-1004 IDLXL04_035164
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 97.694 / OH-1004 97.533
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_035164
LocationChr08:16042004-16043830 (+)
DescriptionSimilar to EMB1796: Pentatricopeptide repeat-containing protein At3g49240, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g49240 May play a role in embryogenesis. No verified direct reference in this release
At1g10270 May function as a transcriptional regulator essential for early embryogenesis.
Arabidopsis GLUTAMINE-RICH PROTEIN23 is essential for early embryogenesis and encodes a novel nuclear PPR motif protein that interacts with RNA polymerase II subunit III.2006 · DOI: 10.1105/tpc.105.039495
At1g09900 Pentatricopeptide repeat-containing protein At1g09900. No verified direct reference in this release
At1g63080 Pentatricopeptide repeat-containing protein At1g63080, mitochondrial. No verified direct reference in this release
At1g12300 Pentatricopeptide repeat-containing protein At1g12300, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035164 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009960 endosperm development Biological Process
GO:0051301 cell division Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G09900
ath:AT1G10270
ath:AT1G63080
ath:AT3G49240
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.759
Rank 1 · LXL04_035164 · OH-1004
Plastid0.180
Rank 2 · LXL04_035164 · OH-1004
Nucleus0.051
Rank 3 · LXL04_035164 · OH-1004
Cytoplasm0.034
Rank 4 · LXL04_035164 · OH-1004
Cell membrane0.014
Rank 5 · LXL04_035164 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13812.13PPR_3124-177 aa
PF29070.1MSC6_N130-262 aa
PF13041.13PPR_2166-214 aa
PF13041.13PPR_2201-247 aa
PF29070.1MSC6_N278-377 aa
PF17177.11PPR_long293-433 aa
PF13041.13PPR_2311-340 aa
PF13812.13PPR_3350-394 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_035164PF13812.13PPR_31241772.2e-2692.4
LXL04_035164PF29070.1MSC6_N1302622.7e-2590.0
LXL04_035164PF13041.13PPR_21662141.3e-54182.8
LXL04_035164PF13041.13PPR_22012471.3e-54182.8
LXL04_035164PF29070.1MSC6_N2783772.7e-2590.0
LXL04_035164PF17177.11PPR_long2934332.3e-1557.2
LXL04_035164PF13041.13PPR_23113401.3e-54182.8
LXL04_035164PF13812.13PPR_33503942.2e-2692.4
LXL04_035164PF12854.14PPR_13513796.7e-35119.2
LXL04_035164PF13041.13PPR_23533991.3e-54182.8
LXL04_035164PF01535.27PPR3543833.6e-46152.9
LXL04_035164PF29070.1MSC6_N3675142.7e-2590.0
LXL04_035164PF12854.14PPR_13814136.7e-35119.2
LXL04_035164PF13041.13PPR_23854331.3e-54182.8
LXL04_035164PF17177.11PPR_long4075172.3e-1557.2
LXL04_035164PF13812.13PPR_34114652.2e-2692.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M3A8Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g49240, mitochondrial58.279%Swiss-Protstrong database homology
Q9SY69Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g1027034.127%Swiss-Protmoderate database homology
Q3EDF8Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g0990024.116%Swiss-Protweak database homology
Q9CAN5Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g63080, mitochondrial26.667%Swiss-Protweak database homology
Q0WKV3Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g12300, mitochondrial25.854%Swiss-Protweak database homology

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