TkA04G142420 | RubberDandelionOmics

Gene overview

TkA04G142420

Reference: TK1151 Chr: Chr04 Coordinates: 36833978-36834784 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

807 bp · TkA04G142420|TK1151|cDNA

ATGTCAGTGGAGGACCGCGCGGACTTCCTATCCCAAACAGCCGGTTTCTCAACCCCCGAAATCCAAGACATCGAATCCGTACTCTCAATGATGCCTTCCATAACACTCCAAGTCACATGCGGGACAGAAGGCGAAGAAGGCATCCAAGAAGGGGACATAGTCACCCTCCAATCATGGGTCACCTTAAAAAGATCCAACGGGTTAACCCGCGCCCTACCCCATTCCCCGTTCTACCCTTTCCACAAAGAAGAAAACCACTG...

CDS

Download CDS FASTA

807 bp · TkA04G142420|TK1151|CDS

ATGTCAGTGGAGGACCGCGCGGACTTCCTATCCCAAACAGCCGGTTTCTCAACCCCCGAAATCCAAGACATCGAATCCGTACTCTCAATGATGCCTTCCATAACACTCCAAGTCACATGCGGGACAGAAGGCGAAGAAGGCATCCAAGAAGGGGACATAGTCACCCTCCAATCATGGGTCACCTTAAAAAGATCCAACGGGTTAACCCGCGCCCTACCCCATTCCCCGTTCTACCCTTTCCACAAAGAAGAAAACCACTG...

Protein

Download Protein FASTA

268 aa · TkA04G142420|TK1151|PROTEIN

MSVEDRADFLSQTAGFSTPEIQDIESVLSMMPSITLQVTCGTEGEEGIQEGDIVTLQSWVTLKRSNGLTRALPHSPFYPFHKEENHWFLLADQSSNNVWFSQKLSFMDEAAAITAASKSIEETMEGSGASDGEIGKAVREAVEKVRSGSRLVMGKFQAPSEGSYNLTCFLLCDSWIGCDKKTGVKVKVVKRTRAGTRGGVGDDGAAVDDGGDEVDEEAEEEDYDEDYESEYSEDEEEEEEEEEDSNKNKSKNNKSKNGKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G142420`
TK1151 ID	TkA04G142420
OH-1004 ID	LXL04_035325
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 40.120 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G142420

Location Chr04:36833978-36834784 (-)

Description Similar to ERDJ2A: DnaJ protein ERDJ2A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g79940`	Required for integral membrane and secreted preprotein translocation across the endoplasmic reticulum membrane.	No verified direct reference in this release
`At4g21180`	Required for integral membrane and secreted preprotein translocation across the endoplasmic reticulum membrane.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0307200`	May be required for integral membrane and secreted preprotein translocation across the endoplasmic reticulum membrane.	Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants.2013 · DOI: 10.1093/jxb/ert312

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035325 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006614 SRP-dependent cotranslational protein targeting to membrane Biological Process

GO:0006620 post-translational protein targeting to endoplasmic reticulum membrane Biological Process

GO:0015031 protein transport Biological Process

GO:0031204 post-translational protein targeting to membrane, translocation Biological Process

GO:0071941 nitrogen cycle metabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G79940

ath:AT4G21180

dosa:Os04g0307200

mmu:140740

pon:100173604

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.892

Rank 1 · TkA04G142420 · TK1151

Cytoplasm0.207

Rank 2 · TkA04G142420 · TK1151

Cell membrane0.030

Rank 3 · TkA04G142420 · TK1151

Endoplasmic reticulum0.022

Rank 4 · TkA04G142420 · TK1151

Mitochondrion0.022

Rank 5 · TkA04G142420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02889Sec6331-183 aa

PF05793TFIIF_alpha46-96 aa

PF22251PFF1_TM162-258 aa

PF28211GlpR200-257 aa

PF05793TFIIF_alpha201-257 aa

PF07133Merozoite_SPAM210-257 aa

PF06524NOA36213-247 aa

PF15002ERK-JNK_inhib214-261 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G142420	`PF02889`	Sec63	31	183	3.6e-05	23.9
TkA04G142420	`PF05793`	TFIIF_alpha	46	96	8.5	5.6
TkA04G142420	`PF22251`	PFF1_TM	162	258	0.11	12.7
TkA04G142420	`PF28211`	GlpR	200	257	1.3	9.7
TkA04G142420	`PF05793`	TFIIF_alpha	201	257	8.5	5.6
TkA04G142420	`PF07133`	Merozoite_SPAM	210	257	0.72	10.6
TkA04G142420	`PF06524`	NOA36	213	247	5.8	6.9
TkA04G142420	`PF15002`	ERK-JNK_inhib	214	261	0.65	10.4
TkA04G142420	`PF03985`	Paf1	214	266	6.3	6.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WT48`	Arabidopsis thaliana	sp\|Q0WT48\|DNJ21_ARATH DnaJ protein ERDJ2A	71.400%	Swiss-Prot	High
`F4JIN3`	Arabidopsis thaliana	sp\|F4JIN3\|DNJ29_ARATH DnaJ protein ERDJ2B	63.700%	Swiss-Prot	High
`Q7XVN7`	Oryza sativa subsp. japonica	sp\|Q7XVN7\|DJC43_ORYSJ DnaJ protein ERDJ2	64.800%	Swiss-Prot	High

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