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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G121700
Reference: TK1151 Chr: Chr04 Coordinates: 31636800-31644084 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4413 bp · TkA04G121700|TK1151|cDNA

TTAGCCGGTGATGACCTCATGAGGTCCATGAGCCGGAATATGAGCCGGAACATGAGCCGCAACTTGAGCCGAAGAGGTAGTCTAGCCTCAAGAAGCACCAGGGGTTGGGGTACCGCCAGTATCAGGGAAGCATTCACTACACCAGGTCCCGATATCTTCCAGAAAAGTGGGAGAGAAGATGATGAAGATGAACTCATGTGGGCTGCCATTGAAAGGCTCCCCACTTATGATCGATTAAGAAAAGGATTCTTGACTCAAGT...

CDS

Download CDS FASTA

3660 bp · TkA04G121700|TK1151|CDS

ATGAGGTCCATGAGCCGGAATATGAGCCGGAACATGAGCCGCAACTTGAGCCGAAGAGGTAGTCTAGCCTCAAGAAGCACCAGGGGTTGGGGTACCGCCAGTATCAGGGAAGCATTCACTACACCAGGTCCCGATATCTTCCAGAAAAGTGGGAGAGAAGATGATGAAGATGAACTCATGTGGGCTGCCATTGAAAGGCTCCCCACTTATGATCGATTAAGAAAAGGATTCTTGACTCAAGTTCTTGATGATGGGAAAGT...

Protein

Download Protein FASTA

1219 aa · TkA04G121700|TK1151|PROTEIN

MRSMSRNMSRNMSRNLSRRGSLASRSTRGWGTASIREAFTTPGPDIFQKSGREDDEDELMWAAIERLPTYDRLRKGFLTQVLDDGKVVREEIDVANLGPEERQNLMKNIQEGIDNDNERLLERLRDRIDRVGIEVPRIEIRYQDLSIEGDAFVGSRALPTLLNSTINSIENVLGFMRLFPSKKRVVKILHEVSGIVTPSRMTLLLGPPGSGKTTLLKALAGKLERDLRVTGKVSYCGHEMNEFVPQRTCAYISQHDLHHG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G121700
TK1151 IDTkA04G121700
OH-1004 IDLXL04_035590
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.500
Protein coverage (%)TK1151 100.000 / OH-1004 84.160
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G121700
LocationChr04:31636800-31644084 (+)
DescriptionSimilar to PDR2: Pleiotropic drug resistance protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g36380 May be a general defense protein. No verified direct reference in this release
At1g66950 May be a general defense protein. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os11g0587600 May be a general defense protein. No verified direct reference in this release
UniProt: A2WSH0 May be a general defense protein. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035590 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000302 response to reactive oxygen species Biological Process
GO:0009914 hormone transport Biological Process
GO:0042908 xenobiotic transport Biological Process
GO:2000032 regulation of secondary shoot formation Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0140359 ABC-type transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G66950
ath:AT2G36380
dosa:Os11g0587600
nta:107799533
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.659
Rank 1 · TkA04G121700 · TK1151
Endoplasmic reticulum0.152
Rank 2 · TkA04G121700 · TK1151
Cytoplasm0.132
Rank 3 · TkA04G121700 · TK1151
Lysosome / Vacuole0.093
Rank 4 · TkA04G121700 · TK1151
Golgi apparatus0.075
Rank 5 · TkA04G121700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13207AAA_1772-129 aa
PF19993DO-GTPase292-129 aa
PF14510ABC_trans_N115-163 aa
PF04665Pox_A32162-190 aa
PF02367TsaE182-225 aa
PF01695IstB_IS21183-222 aa
PF00005ABC_tran189-370 aa
PF09818ABC_ATPase190-220 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G121700PF13207AAA_17721290.000123.3
TkA04G121700PF19993DO-GTPase2921290.02515.0
TkA04G121700PF14510ABC_trans_N1151633.1e-0731.4
TkA04G121700PF04665Pox_A321621901.19.4
TkA04G121700PF02367TsaE1822257.6e-0523.4
TkA04G121700PF01695IstB_IS211832220.2411.6
TkA04G121700PF00005ABC_tran1893703.1e-40138.7
TkA04G121700PF09818ABC_ATPase1902200.005416.5
TkA04G121700PF20720nSTAND31912260.0001821.9
TkA04G121700PF13481AAA_251932300.0001522.2
TkA04G121700PF20703nSTAND11932180.1312.6
TkA04G121700PF00437T2SSE1942260.01714.5
TkA04G121700PF13191AAA_161952362.1e-0835.6
TkA04G121700PF03193RsgA_GTPase1952261.1e-0526.1
TkA04G121700PF12775AAA_71952260.01915.2
TkA04G121700PF13086AAA_111952360.06313.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q7PC87Arabidopsis thalianasp|Q7PC87|AB34G_ARATH ABC transporter G family member 3469.600%Swiss-ProtHigh
Q7PC84Arabidopsis thalianasp|Q7PC84|AB39G_ARATH ABC transporter G family member 3969.400%Swiss-ProtHigh
Q8GU84Oryza sativa subsp. japonicasp|Q8GU84|AB48G_ORYSJ ABC transporter G family member 4858.900%Swiss-ProtHigh
A2WSH0Oryza sativa subsp. indicasp|A2WSH0|AB36G_ORYSI ABC transporter G family member 3667.000%Swiss-ProtHigh

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