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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G116340
Reference: TK1151 Chr: Chr04 Coordinates: 30204065-30206003 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1531 bp · TkA04G116340|TK1151|cDNA

CCAAAAGCCGCTCGTTACAATGGCGGTATTTTCTTCATCATTCGTGTCCCTTTACTCGCCGTGTCTTCATCAACGAACCAGTAATGCTCAGCTCACGAAATACTCTGTTCCGATTAGAACACACAACCGTAAATACACAATCGTAAGTGCCGGATCTGATATACGGAGGGAAGCAGTGGTCATAATCGGAGCTGGAATCGCCGGCCTCTCCACTGCTGTTTCGCTACACAGATTGGGGGTTCGTTCGGTGGTGCTGGAGC...

CDS

Download CDS FASTA

1338 bp · TkA04G116340|TK1151|CDS

ATGGCGGTATTTTCTTCATCATTCGTGTCCCTTTACTCGCCGTGTCTTCATCAACGAACCAGTAATGCTCAGCTCACGAAATACTCTGTTCCGATTAGAACACACAACCGTAAATACACAATCGTAAGTGCCGGATCTGATATACGGAGGGAAGCAGTGGTCATAATCGGAGCTGGAATCGCCGGCCTCTCCACTGCTGTTTCGCTACACAGATTGGGGGTTCGTTCGGTGGTGCTGGAGCAAGCGGAATCGTTGCGGAC...

Protein

Download Protein FASTA

445 aa · TkA04G116340|TK1151|PROTEIN

MAVFSSSFVSLYSPCLHQRTSNAQLTKYSVPIRTHNRKYTIVSAGSDIRREAVVIIGAGIAGLSTAVSLHRLGVRSVVLEQAESLRTGGTSLTLFKNGWKILDTMGVGDELRSQYLEIQGMVIRTETGRELRSFTFKEADQTQEVRAVERRTLLETLAKQLPAECISFSSKLQNIQKQEDGETLLELVNGTQIISKVVIGCDGIRSPLAKWMGFSEPKYVGYCAFRGLGEYPNGQPYESRVNYIYGRGVRAAYVPVSSTK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G116340
TK1151 IDTkA04G116340
OH-1004 IDLXL04_035681
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 99.775 / OH-1004 49.498
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G116340
LocationChr04:30204065-30206003 (+)
DescriptionSimilar to At1g76050: RNA pseudouridine synthase 2, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g38540 Monooxygenase 2. No verified direct reference in this release
At5g05320 Monooxygenase 3. No verified direct reference in this release
At4g15760 Monooxygenase 1. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035681 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000455 enzyme-directed rRNA pseudouridine synthesis Biological Process
GO:0002239 response to oomycetes Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0004497 monooxygenase activity Molecular Function
GO:0009982 pseudouridine synthase activity Molecular Function
GO:0071949 FAD binding Molecular Function
GO:0120159 rRNA pseudouridine synthase activity Molecular Function
KEGG gene cross-reference
ath:AT1G76050
ath:AT4G38540
ath:AT5G05320
bsu:BSU15460
dosa:Os06g0717400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.968
Rank 1 · TkA04G116340 · TK1151
Mitochondrion0.046
Rank 2 · TkA04G116340 · TK1151
Cytoplasm0.021
Rank 3 · TkA04G116340 · TK1151
Peroxisome0.017
Rank 4 · TkA04G116340 · TK1151
Nucleus0.014
Rank 5 · TkA04G116340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01262AlaDh_PNT_C40-81 aa
PF03949Malic_M45-75 aa
PF01946Thi449-89 aa
PF01494FAD_binding_352-388 aa
PF03486HI0933_like52-85 aa
PF05834Lycopene_cycl53-228 aa
PF01266DAO53-87 aa
PF00890FAD_binding_253-86 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G116340PF01262AlaDh_PNT_C40810.006116.7
TkA04G116340PF03949Malic_M45750.003617.4
TkA04G116340PF01946Thi449890.003617.3
TkA04G116340PF01494FAD_binding_3523883.6e-2692.9
TkA04G116340PF03486HI0933_like52850.008216.4
TkA04G116340PF05834Lycopene_cycl532289.3e-0832.3
TkA04G116340PF01266DAO53874.2e-0627.3
TkA04G116340PF00890FAD_binding_253861.6e-0525.1
TkA04G116340PF07992Pyr_redox_253910.0005120.3
TkA04G116340PF00070Pyr_redox53860.002718.9
TkA04G116340PF12831FAD_oxidored53850.02514.6
TkA04G116340PF01134GIDA53790.04713.5
TkA04G116340PF13738Pyr_redox_354830.004217.1
TkA04G116340PF13450NAD_binding_855901.4e-0526.0
TkA04G116340PF01593Amino_oxidase60910.5110.3
TkA04G116340PF03949Malic_M1342050.003617.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81816Arabidopsis thalianasp|O81816|MO2_ARATH Monooxygenase 235.000%Swiss-ProtMedium
Q9FLC2Arabidopsis thalianasp|Q9FLC2|MO3_ARATH Monooxygenase 333.400%Swiss-ProtMedium
O81815Arabidopsis thalianasp|O81815|MO1_ARATH Monooxygenase 132.900%Swiss-ProtMedium

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