TkA04G106490 | RubberDandelionOmics

Gene overview

TkA04G106490

Reference: TK1151 Chr: Chr04 Coordinates: 27710709-27714396 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2712 bp · TkA04G106490|TK1151|cDNA

TTGATAAAGAAACTTATAAAATCATGATGATGGGCAGAGAGCCTGCAGGAAAGTCTCTGTAGTGCTTTCCCCACTGAGCCACTGATCTCCATCCTTTCTTCTCCCCATTCCATGCGTACATAGCTTAGTGTGTGGAGTATTCGTTTTATCAAAAGAGATTTTTGCACATTTTAAGCCGAAAGCCCCACAATCATGAGACCTCACAGCAACATTGCTCTTGCTTTAATGATCAAATGCCTCGCAACGACGATTCTGACGAT...

CDS

Download CDS FASTA

2328 bp · TkA04G106490|TK1151|CDS

ATGAGACCTCACAGCAACATTGCTCTTGCTTTAATGATCAAATGCCTCGCAACGACGATTCTGACGATGATCGTCTCTGCAGAGTCACCCCAGCCTCCATTTTCATGCGACCCTTCATCACCTACACCGCCATACCCATTTTGCAACGCCAGTTTACCGATTTCCAACCGTGCTCACGACGTCGTTTCACGACTTACCTTAGACGAGAAAGTTTTGCAGCTGGTGAACGGCGCGCCGGGGATTCCTCGCCTTGGGATATC...

Protein

Download Protein FASTA

775 aa · TkA04G106490|TK1151|PROTEIN

MRPHSNIALALMIKCLATTILTMIVSAESPQPPFSCDPSSPTPPYPFCNASLPISNRAHDVVSRLTLDEKVLQLVNGAPGIPRLGISAYEWWSEALHGISRHGKGVRFNGTITASTQFPQVILTAASFDSHLWYRIGQAIGREARAMFNAGQARGLTFWAPNINVLRDPRWGRAQETPGEDPLVIGGYSVSYVRGIQGDNFEGGKIDPNSDHLQASGCCKHFVANDLDNWKTANRYNFDANITQQDLADTYLPPFKQCVQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G106490`
TK1151 ID	TkA04G106490
OH-1004 ID	LXL04_035808
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G106490

Location Chr04:27710709-27714396 (-)

Description Similar to BXL7: Probable beta-D-xylosidase 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g78060`	Probable beta-D-xylosidase 7.	No verified direct reference in this release
`At5g10560`	Probable beta-D-xylosidase 6.	No verified direct reference in this release
`At3g19620`	Probable beta-D-xylosidase 5.	No verified direct reference in this release
`At5g64570`	Beta-D-xylosidase showing an optimal efficiency with the natural substrate xylobiose.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035808 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009627 systemic acquired resistance Biological Process

GO:0031222 arabinan catabolic process Biological Process

GO:0045493 xylan catabolic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G78060

ath:AT3G19620

ath:AT5G09730

ath:AT5G10560

ath:AT5G64570

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.823

Rank 1 · TkA04G106490 · TK1151

Cytoplasm0.051

Rank 2 · TkA04G106490 · TK1151

Lysosome / Vacuole0.049

Rank 3 · TkA04G106490 · TK1151

Cell membrane0.034

Rank 4 · TkA04G106490 · TK1151

Endoplasmic reticulum0.033

Rank 5 · TkA04G106490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00933Glyco_hydro_3112-362 aa

PF01915Glyco_hydro_3_C409-639 aa

PF14310Fn3-like697-767 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G106490	`PF00933`	Glyco_hydro_3	112	362	3.7e-30	106.2
TkA04G106490	`PF01915`	Glyco_hydro_3_C	409	639	3.7e-52	177.9
TkA04G106490	`PF14310`	Fn3-like	697	767	6.6e-08	33.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SGZ5`	Arabidopsis thaliana	sp\|Q9SGZ5\|BXL7_ARATH Probable beta-D-xylosidase 7	61.000%	Swiss-Prot	High
`Q9LXA8`	Arabidopsis thaliana	sp\|Q9LXA8\|BXL6_ARATH Probable beta-D-xylosidase 6	49.400%	Swiss-Prot	Medium
`Q9LJN4`	Arabidopsis thaliana	sp\|Q9LJN4\|BXL5_ARATH Probable beta-D-xylosidase 5	50.300%	Swiss-Prot	High
`Q9FLG1`	Arabidopsis thaliana	sp\|Q9FLG1\|BXL4_ARATH Beta-D-xylosidase 4	48.900%	Swiss-Prot	Medium

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