LXL04_035808 | RubberDandelionOmics

Gene overview

LXL04_035808

Reference: OH-1004 Chr: Chr08 Coordinates: 29418077-29421380 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2403 bp · LXL04_035808|LXL04_035808|OH1004|cDNA

ATGAGACCTCACAGCAACATTGCTCTTGCTTTAATGATCAAATGCCTCGCAACGACGATTCTGACGATGATCGTCTCTGCAGAGTCACCCCAGCCTCCATTTTCATGCGACCCTTCATCACCTACACCGCCATACCCATTTTGCAACGCCAGTTTACCGATTTCCAACCGTGCTCACGACGTCGTTTCACGACTTACCTTAGACGAGAAAGTTTTGCAGCTGGTGAACGGCGCGCCGGGGATTCCTCGCCTTGGGATATC...

CDS

Download CDS FASTA

2403 bp · LXL04_035808|LXL04_035808|OH1004|CDS

ATGAGACCTCACAGCAACATTGCTCTTGCTTTAATGATCAAATGCCTCGCAACGACGATTCTGACGATGATCGTCTCTGCAGAGTCACCCCAGCCTCCATTTTCATGCGACCCTTCATCACCTACACCGCCATACCCATTTTGCAACGCCAGTTTACCGATTTCCAACCGTGCTCACGACGTCGTTTCACGACTTACCTTAGACGAGAAAGTTTTGCAGCTGGTGAACGGCGCGCCGGGGATTCCTCGCCTTGGGATATC...

Protein

Download Protein FASTA

800 aa · LXL04_035808|LXL04_035808|OH1004|PROTEIN

MRPHSNIALALMIKCLATTILTMIVSAESPQPPFSCDPSSPTPPYPFCNASLPISNRAHDVVSRLTLDEKVLQLVNGAPGIPRLGISAYEWWSEALHGISRHGKGVRFNGTITASTQFPQVILTAASFDSHLWYRIGQAIGREARAMFNAGQARGLTFWAPNINVLRDPRWGRAQETPGEDPLVIGGYSVSYVRGIQGDNFEGGKIDPNSDHLQASGCCKHFVANDLDNWKTANRYNFDANVSLNSEVFSCIIELYGSGF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035808`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_035808

Location Chr08:29418077-29421380 (+)

Description Similar to BXL7: Probable beta-D-xylosidase 7

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g78060`	Probable beta-D-xylosidase 7.	No verified direct reference in this release
`At5g10560`	Probable beta-D-xylosidase 6.	No verified direct reference in this release
`At3g19620`	Probable beta-D-xylosidase 5.	No verified direct reference in this release
`At5g64570`	Beta-D-xylosidase showing an optimal efficiency with the natural substrate xylobiose.	No verified direct reference in this release
`At5g09730`	Involved in the hydrolysis of arabinan.	Purification, functional characterization, cloning, and identification of mutants of a seed-specific arabinan hydrolase in Arabidopsis.2006 · DOI: 10.1093/jxb/erj205

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035808 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009627 systemic acquired resistance Biological Process

GO:0031222 arabinan catabolic process Biological Process

GO:0045493 xylan catabolic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G78060

ath:AT3G19620

ath:AT5G09730

ath:AT5G10560

ath:AT5G64570

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.803

Rank 1 · LXL04_035808 · OH-1004

Lysosome / Vacuole0.060

Rank 2 · LXL04_035808 · OH-1004

Cytoplasm0.054

Rank 3 · LXL04_035808 · OH-1004

Endoplasmic reticulum0.036

Rank 4 · LXL04_035808 · OH-1004

Cell membrane0.034

Rank 5 · LXL04_035808 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00933.28Glyco_hydro_3112-225 aa

PF00933.28Glyco_hydro_3258-387 aa

PF01915.28Glyco_hydro_3_C434-664 aa

PF14310.13Fn3-like722-792 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035808	`PF00933.28`	Glyco_hydro_3	112	225	2.8e-28	100.0
LXL04_035808	`PF00933.28`	Glyco_hydro_3	258	387	2.8e-28	100.0
LXL04_035808	`PF01915.28`	Glyco_hydro_3_C	434	664	3.9e-52	177.9
LXL04_035808	`PF14310.13`	Fn3-like	722	792	6.9e-08	33.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SGZ5`	Arabidopsis thaliana	Probable beta-D-xylosidase 7	59.618%	Swiss-Prot	strong database homology
`Q9LXA8`	Arabidopsis thaliana	Probable beta-D-xylosidase 6	48.107%	Swiss-Prot	moderate database homology
`Q9LJN4`	Arabidopsis thaliana	Probable beta-D-xylosidase 5	48.485%	Swiss-Prot	moderate database homology
`Q9FLG1`	Arabidopsis thaliana	Beta-D-xylosidase 4	46.477%	Swiss-Prot	moderate database homology
`Q9LXD6`	Arabidopsis thaliana	Beta-D-xylosidase 3	45.625%	Swiss-Prot	moderate database homology

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