TkA04G105150 | RubberDandelionOmics

Gene overview

TkA04G105150

Reference: TK1151 Chr: Chr04 Coordinates: 27376854-27378929 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1222 bp · TkA04G105150|TK1151|cDNA

TAAAAAGTTGTGGATGATGTAGACTTGTGCCATATAATGTAAAGGATCCTGAATAAAAAAGCAACGGCCGAGATTCTCTCCTTGCTTTCTGGCTCCCTCTATTATCTTCCCCTACTCTCACTCCTCCGCACTACCATCACCACCACCACCACCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAGCACATCCTTTTTCTCTCCACGACCATGTTGTTGGGTAAGAGACAGCGGCCTCCGATGAAGAGAACCACCA...

CDS

Download CDS FASTA

492 bp · TkA04G105150|TK1151|CDS

ATGTTGTTGGGTAAGAGACAGCGGCCTCCGATGAAGAGAACCACCAGCATGACGGAATTCACCTTAGATCTCAACCACACCATCAACATCGACGGTGGCCGTGCCAATTCCCAGTCACCACATGATCACCATAGCAACCCGTTCACCACCATCAATCCACCGAGATCAACCGATGGTGCTGCTGCTGATCCGCGGTTCTTCTCACCCCCCGTTACTTCCAAGATTCACCGGCGTAATTCCGCTGACTACTCCCAACCAGC...

Protein

Download Protein FASTA

163 aa · TkA04G105150|TK1151|PROTEIN

MLLGKRQRPPMKRTTSMTEFTLDLNHTINIDGGRANSQSPHDHHSNPFTTINPPRSTDGAAADPRFFSPPVTSKIHRRNSADYSQPAHFLRACHLCNRHLIAGRDIFMYRGDSAFCSLECRQEQMNLDEKKDKCSISSKTPVTTTSSGTSETVAAIIGKFNIE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G105150`
TK1151 ID	TkA04G105150
OH-1004 ID	LXL04_035826
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.700
Protein coverage (%)	TK1151 95.706 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G105150

Location Chr04:27376854-27378929 (-)

Description Similar to FLZ5: FCS-Like Zinc finger 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g22160`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At1g78020`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	FCS-like zinc finger 6 and 10 repress SnRK1 signalling in Arabidopsis.2018 · DOI: 10.1111/tpj.13854
`At4g39795`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At5g65040`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At2g44670`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035826 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002213 defense response to insect Biological Process

GO:0009625 response to insect Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009749 response to glucose Biological Process

GO:0042594 response to starvation Biological Process

GO:0090351 seedling development Biological Process

GO:1905582 response to mannose Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT1G22160

ath:AT1G78020

ath:AT2G44670

ath:AT4G39795

ath:AT5G65040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.587

Rank 1 · TkA04G105150 · TK1151

Cytoplasm0.456

Rank 2 · TkA04G105150 · TK1151

Cell membrane0.101

Rank 3 · TkA04G105150 · TK1151

Endoplasmic reticulum0.047

Rank 4 · TkA04G105150 · TK1151

Lysosome / Vacuole0.018

Rank 5 · TkA04G105150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04570zf-FLZ81-131 aa

PF04640PLATZ82-121 aa

PF16164VWA_N293-154 aa

PF04640PLATZ130-139 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G105150	`PF04570`	zf-FLZ	81	131	3.9e-25	87.8
TkA04G105150	`PF04640`	PLATZ	82	121	1.9	9.8
TkA04G105150	`PF16164`	VWA_N2	93	154	0.02	15.7
TkA04G105150	`PF04640`	PLATZ	130	139	1.9	9.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VY80`	Arabidopsis thaliana	sp\|Q8VY80\|FLZ5_ARATH FCS-Like Zinc finger 5	44.900%	Swiss-Prot	Medium
`Q9SGZ8`	Arabidopsis thaliana	sp\|Q9SGZ8\|FLZ6_ARATH FCS-Like Zinc finger 6	45.800%	Swiss-Prot	Medium
`F4JW68`	Arabidopsis thaliana	sp\|F4JW68\|FLZ7_ARATH FCS-Like Zinc finger 7	39.700%	Swiss-Prot	Medium
`Q9LV75`	Arabidopsis thaliana	sp\|Q9LV75\|IRM1_ARATH Protein INCREASED RESISTANCE TO MYZUS PERSICAE 1	60.000%	Swiss-Prot	Low
`O80506`	Arabidopsis thaliana	sp\|O80506\|FLZ3_ARATH FCS-Like Zinc finger 3	60.900%	Swiss-Prot	Low

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