LXL04_035826 | RubberDandelionOmics

Gene overview

LXL04_035826

Reference: OH-1004 Chr: Chr08 Coordinates: 29848245-29849001 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

478 bp · LXL04_035826|LXL04_035826|OH1004|cDNA

ATGTTGTTGGGTAAGAGACAGCGGCCTCCGATGAAGAGAACCACCAGCATGACGGAATTCACCTTAGATCTCAACCACACCATCAACATCGACGGTGGCCGTGCCAATTCCCAGTCACCACATGATCACCATAGCAACCCGTTCACCACCATCAATCCACCGAGATCAACCGATGGTGCTGCTGCTGATCCGCGGTTCTTCTCACCCCCCGTTACTACTTCCAAGATTCACCGGCGTAATTCCGCTGACTACTCCCAACC...

CDS

Download CDS FASTA

474 bp · LXL04_035826|LXL04_035826|OH1004|CDS

ATGTTGTTGGGTAAGAGACAGCGGCCTCCGATGAAGAGAACCACCAGCATGACGGAATTCACCTTAGATCTCAACCACACCATCAACATCGACGGTGGCCGTGCCAATTCCCAGTCACCACATGATCACCATAGCAACCCGTTCACCACCATCAATCCACCGAGATCAACCGATGGTGCTGCTGCTGATCCGCGGTTCTTCTCACCCCCCGTTACTACTTCCAAGATTCACCGGCGTAATTCCGCTGACTACTCCCAACC...

Protein

Download Protein FASTA

157 aa · LXL04_035826|LXL04_035826|OH1004|PROTEIN

MLLGKRQRPPMKRTTSMTEFTLDLNHTINIDGGRANSQSPHDHHSNPFTTINPPRSTDGAAADPRFFSPPVTTSKIHRRNSADYSQPAHFLRACHLCNRHLIAGRDIFMYRGDSAFCSLECRQEQMNLDEKKDKCSISSKTPVTTTSSGTSETVAAM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035826`
TK1151 ID	TkA04G105150
OH-1004 ID	LXL04_035826
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.700
Protein coverage (%)	TK1151 95.706 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035826

Location Chr08:29848245-29849001 (+)

Description Similar to FLZ5: FCS-Like Zinc finger 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g22160`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At1g78020`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	FCS-like zinc finger 6 and 10 repress SnRK1 signalling in Arabidopsis.2018 · DOI: 10.1111/tpj.13854
`At4g39795`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At5g65040`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At2g44670`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035826 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002213 defense response to insect Biological Process

GO:0009625 response to insect Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009749 response to glucose Biological Process

GO:0042594 response to starvation Biological Process

GO:0090351 seedling development Biological Process

GO:1905582 response to mannose Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT1G22160

ath:AT1G78020

ath:AT2G44670

ath:AT4G39795

ath:AT5G65040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.583

Rank 1 · LXL04_035826 · OH-1004

Cytoplasm0.461

Rank 2 · LXL04_035826 · OH-1004

Cell membrane0.118

Rank 3 · LXL04_035826 · OH-1004

Endoplasmic reticulum0.051

Rank 4 · LXL04_035826 · OH-1004

Lysosome / Vacuole0.018

Rank 5 · LXL04_035826 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04570.21zf-FLZ82-132 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035826	`PF04570.21`	zf-FLZ	82	132	3.6e-25	87.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VY80`	Arabidopsis thaliana	FCS-Like Zinc finger 5	45.860%	Swiss-Prot	moderate database homology
`Q9SGZ8`	Arabidopsis thaliana	FCS-Like Zinc finger 6	44.654%	Swiss-Prot	moderate database homology
`F4JW68`	Arabidopsis thaliana	FCS-Like Zinc finger 7	41.481%	Swiss-Prot	moderate database homology
`Q9LV75`	Arabidopsis thaliana	Protein INCREASED RESISTANCE TO MYZUS PERSICAE 1	37.500%	Swiss-Prot	moderate database homology
`O80506`	Arabidopsis thaliana	FCS-Like Zinc finger 3	50.000%	Swiss-Prot	weak database homology

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