TkA04G083070 | RubberDandelionOmics

Gene overview

TkA04G083070

Reference: TK1151 Chr: Chr04 Coordinates: 21738888-21743470 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1517 bp · TkA04G083070|TK1151|cDNA

AAAAAATACAATCCATTTCCCACCAACTATTAGAAACTTAAATAGGGGAGAAAACGCTACATAGAAGCTGGAAATTGGACACGATTTTTTTTTGGCAAACGGAGTCCACGTATTAACTGCTATGGTGGCAAGAAACCAACATTTGGTTCCCATAACATGGGGATCATCAACAAAGTTCAGTATACTTCAGGTTTTTGTTACACTTCTTTTTGCTGTTTTTTTCGTCGGAGCAGTTTATATGGCCGGAGAGTACGTCAGAT...

CDS

Download CDS FASTA

1077 bp · TkA04G083070|TK1151|CDS

ATGTTTTCAGGCGATTCAATGTCAGAGTGCAATTTATTCTCTGGGAAATGGGTGTTTGATAACAAGTCTTACCCTCTTTACAAAGAGAAAGATTGCAAATTCATGTCGGATCAATTGGCTTGCAACAAGTTTGGAAGGGAAGATTTGAGCTATCAAAACTGGAGATGGCAACCTCACCATTGTGATCTACCAAGGTTCAATGCAACAATATTGTTGGAGAGGCTAAGGAATAAGAGGATGGTGTTTGTAGGGGATTCACT...

Protein

Download Protein FASTA

358 aa · TkA04G083070|TK1151|PROTEIN

MFSGDSMSECNLFSGKWVFDNKSYPLYKEKDCKFMSDQLACNKFGREDLSYQNWRWQPHHCDLPRFNATILLERLRNKRMVFVGDSLNRGQWVSMVCLLDSSIQDPNLKFMNYNGSNLISFKAVGYNASIEFYWAPLLVESNSDDPVNHKLPERIVRSQSIEKHARFWTDADILVFNSYLWWRRPHIKVLWGSFEDGNGVYKEVEMLRSYEMALKTWSDWLEIQVDRAKTQLFFITMSPTHERAGEWGASNDQNCYSETD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G083070`
TK1151 ID	TkA04G083070
OH-1004 ID	LXL04_036033
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 86.265 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G083070

Location Chr04:21738888-21743470 (+)

Description Similar to TBL34: Protein trichome birefringence-like 34

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38320`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At5g01620`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0817500`	Xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	Biochemical characterization of rice xylan O-acetyltransferases.2018 · DOI: 10.1007/s00425-018-2882-1
`Os11g0107000`	Xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	Two Trichome Birefringence-Like Proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.2017 · DOI: 10.1104/pp.16.01618
`Os12g0106300`	Xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	Two Trichome Birefringence-Like Proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.2017 · DOI: 10.1104/pp.16.01618

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036033 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0045492 xylan biosynthetic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0016020 membrane Cellular Component

GO:0016413 O-acetyltransferase activity Molecular Function

GO:1990538 xylan O-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G38320

ath:AT5G01620

dosa:Os03g0817500

dosa:Os11g0107000

osa:4349561

osa:4351267

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.196

Rank 1 · TkA04G083070 · TK1151

Extracellular0.164

Rank 2 · TkA04G083070 · TK1151

Lysosome / Vacuole0.102

Rank 3 · TkA04G083070 · TK1151

Cell membrane0.084

Rank 4 · TkA04G083070 · TK1151

Endoplasmic reticulum0.067

Rank 5 · TkA04G083070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416PMR5N9-62 aa

PF24536NXPE4_C56-135 aa

PF13839PC-Esterase63-353 aa

PF14416PMR5N88-94 aa

PF24536NXPE4_C208-233 aa

PF14416PMR5N245-258 aa

PF24536NXPE4_C266-300 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G083070	`PF14416`	PMR5N	9	62	7.7e-23	81.3
TkA04G083070	`PF24536`	NXPE4_C	56	135	0.0014	19.0
TkA04G083070	`PF13839`	PC-Esterase	63	353	3.5e-92	310.1
TkA04G083070	`PF14416`	PMR5N	88	94	7.7e-23	81.3
TkA04G083070	`PF24536`	NXPE4_C	208	233	0.0014	19.0
TkA04G083070	`PF14416`	PMR5N	245	258	7.7e-23	81.3
TkA04G083070	`PF24536`	NXPE4_C	266	300	0.0014	19.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80919`	Arabidopsis thaliana	sp\|O80919\|TBL34_ARATH Protein trichome birefringence-like 34	74.100%	Swiss-Prot	High
`Q8RXQ1`	Arabidopsis thaliana	sp\|Q8RXQ1\|TBL35_ARATH Protein trichome birefringence-like 35	57.800%	Swiss-Prot	High
`Q84TV3`	Oryza sativa subsp. japonica	sp\|Q84TV3\|XOATE_ORYSJ Xylan O-acetyltransferase 14	55.000%	Swiss-Prot	High
`Q2RBL8`	Oryza sativa subsp. japonica	sp\|Q2RBL8\|XOATC_ORYSJ Xylan O-acetyltransferase 12	53.600%	Swiss-Prot	High
`Q2QYU2`	Oryza sativa subsp. japonica	sp\|Q2QYU2\|XOATD_ORYSJ Xylan O-acetyltransferase 13	53.400%	Swiss-Prot	High

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