LXL04_036033 | RubberDandelionOmics

Gene overview

LXL04_036033

Reference: OH-1004 Chr: Chr08 Coordinates: 34424175-34428477 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1248 bp · LXL04_036033|LXL04_036033|OH1004|cDNA

ATGGTGGCAAGAAACCAACATTTGGTTCCCATAACATGGGGATCATCAACAAAGTTCAGTATACTTCAGGTTTTTGTTACACTTCTTTTTGCTGTTTTTTTCGTCGGAGCAGTTTATATGGCGGGAGAGTACGTCAGATTCAACATGATACCAGCGTCGGTTGATCATGATATGTTTTCAGGCGATTCAATGTCAGAGTGCAATTTATTCTCTGGGAAATGGGTGTTTGATAACAAGTCTTACCCTCTTTACAAAGAGAA...

CDS

Download CDS FASTA

1248 bp · LXL04_036033|LXL04_036033|OH1004|CDS

ATGGTGGCAAGAAACCAACATTTGGTTCCCATAACATGGGGATCATCAACAAAGTTCAGTATACTTCAGGTTTTTGTTACACTTCTTTTTGCTGTTTTTTTCGTCGGAGCAGTTTATATGGCGGGAGAGTACGTCAGATTCAACATGATACCAGCGTCGGTTGATCATGATATGTTTTCAGGCGATTCAATGTCAGAGTGCAATTTATTCTCTGGGAAATGGGTGTTTGATAACAAGTCTTACCCTCTTTACAAAGAGAA...

Protein

Download Protein FASTA

415 aa · LXL04_036033|LXL04_036033|OH1004|PROTEIN

MVARNQHLVPITWGSSTKFSILQVFVTLLFAVFFVGAVYMAGEYVRFNMIPASVDHDMFSGDSMSECNLFSGKWVFDNKSYPLYKEKDCKFMSDQLACNKFGREDLSYQNWRWQPHDCDLPRFNATILLERLRNKRMVFVGDSLNRGQWVSMVCLLDSSIQDPNLKFMNYNGSNLISFKAVGYNASIEFYWAPLLVESNSDDPVNHKLPERIVRSQSIEKHARFWTDADILVFNSYLWWRRPHIKVLWGSFEDGNGVYKE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036033`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036033

Location Chr08:34424175-34428477 (-)

Description Similar to TBL34: Protein trichome birefringence-like 34

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38320`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At5g01620`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0817500`	Xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	Biochemical characterization of rice xylan O-acetyltransferases.2018 · DOI: 10.1007/s00425-018-2882-1
`Os11g0107000`	Xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	Two Trichome Birefringence-Like Proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.2017 · DOI: 10.1104/pp.16.01618
`Os12g0106300`	Xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	Two Trichome Birefringence-Like Proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.2017 · DOI: 10.1104/pp.16.01618

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036033 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0045492 xylan biosynthetic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0016020 membrane Cellular Component

GO:0016413 O-acetyltransferase activity Molecular Function

GO:1990538 xylan O-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G38320

ath:AT5G01620

dosa:Os03g0817500

dosa:Os11g0107000

osa:4349561

osa:4351267

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.584

Rank 1 · LXL04_036033 · OH-1004

Cell membrane0.071

Rank 2 · LXL04_036033 · OH-1004

Endoplasmic reticulum0.065

Rank 3 · LXL04_036033 · OH-1004

Extracellular0.047

Rank 4 · LXL04_036033 · OH-1004

Lysosome / Vacuole0.037

Rank 5 · LXL04_036033 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416.12PMR5N66-119 aa

PF13839.13PC-Esterase120-410 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036033	`PF14416.12`	PMR5N	66	119	1.1e-22	80.8
LXL04_036033	`PF13839.13`	PC-Esterase	120	410	5.4e-92	309.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80919`	Arabidopsis thaliana	Protein trichome birefringence-like 34	69.072%	Swiss-Prot	strong database homology
`Q8RXQ1`	Arabidopsis thaliana	Protein trichome birefringence-like 35	56.546%	Swiss-Prot	strong database homology
`Q84TV3`	Oryza sativa subsp. japonica	Xylan O-acetyltransferase 14	55.313%	Swiss-Prot	strong database homology
`Q2RBL8`	Oryza sativa subsp. japonica	Xylan O-acetyltransferase 12	53.631%	Swiss-Prot	strong database homology
`Q2QYU2`	Oryza sativa subsp. japonica	Xylan O-acetyltransferase 13	53.352%	Swiss-Prot	strong database homology

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