TkA04G062590 | RubberDandelionOmics

Gene overview

TkA04G062590

Reference: TK1151 Chr: Chr04 Coordinates: 16719622-16723483 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2406 bp · TkA04G062590|TK1151|cDNA

CAAACATACCCAAATTTTATATCCGTTCCAATTGTGGAAGATACCAAAACGGGTAAAGAGAAGACAAATCCACGCTCCCGTTCAACCCCATAATCAGCGTCTTTCGTTGTCGATGGATCTTCCATGTTACCTATTGATCTGTAGACACGTCATTCTTCGACACCTGTCCGTCGATTCATCGTCTCTCTCCTCCTTTGTTTTCTGACCTCCCATCACGTCTTCGTACGATCACGACAGACAAGTCTCATGGTCGAGTAGAT...

CDS

Download CDS FASTA

1614 bp · TkA04G062590|TK1151|CDS

ATGGCGGGTAAAGCGAAGGAAACAGATTATTTCTTGATCGAAGACGAGTATGATGACAACGAGAACGATGATCTAGAAGCAAACAACAGTGATGAAAATGATGATGATGACAACGACGACGTTTCCAGTGGTGAATCGTCTATTTCTCAATCAGCTGGTCAATGGCCTCAAAGTTACAAGTATACACTTGATTCCTACTCAATTTCAGCTACCCCAAGTGTGGGATTCCTTAGACGCCCATCGGGTTCTATATATTCTAT...

Protein

Download Protein FASTA

537 aa · TkA04G062590|TK1151|PROTEIN

MAGKAKETDYFLIEDEYDDNENDDLEANNSDENDDDDNDDVSSGESSISQSAGQWPQSYKYTLDSYSISATPSVGFLRRPSGSIYSMYEPDIDSSNINFGDNIKSKLLIECSKVFSKEDVDRISRKISTWSGRGTLPDQLLGELPITFGCSVTQTVFNSVNVMVGVGVLSMPNTIAQAGWAGVGMLLLLGAICCYTAYLMKLCFESRDTIQTYPDIGEAAFGKYGRLFVQIILYTSLYAYCVEFIILEGDNLTSLFPSAS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G062590`
TK1151 ID	TkA04G062590
OH-1004 ID	LXL04_036221
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.900
Protein coverage (%)	TK1151 94.600 / OH-1004 90.603 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G062590

Location Chr04:16719622-16723483 (-)

Description Similar to AVT1A: Amino acid transporter AVT1A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g41190`	Amino acid transporter AVT1A.	No verified direct reference in this release
`At3g54830`	Amino acid transporter AVT1B.	No verified direct reference in this release
`At2g39130`	Amino acid transporter AVT1C.	No verified direct reference in this release
`At5g02180`	Amino acid transporter AVT1D.	No verified direct reference in this release
`At3g09330`	Amino acid transporter AVT1G.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036221 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0003333 amino acid transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0031090 organelle membrane Cellular Component

GO:0015171 amino acid transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G39130

ath:AT2G41190

ath:AT3G09340

ath:AT3G54830

ath:AT5G02180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.394

Rank 1 · TkA04G062590 · TK1151

Cell membrane0.267

Rank 2 · TkA04G062590 · TK1151

Endoplasmic reticulum0.174

Rank 3 · TkA04G062590 · TK1151

Cytoplasm0.143

Rank 4 · TkA04G062590 · TK1151

Golgi apparatus0.125

Rank 5 · TkA04G062590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01490Aa_trans151-529 aa

PF03845Spore_permease151-399 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G062590	`PF01490`	Aa_trans	151	529	6.7e-61	206.9
TkA04G062590	`PF03845`	Spore_permease	151	399	0.34	10.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80668`	Arabidopsis thaliana	sp\|O80668\|AVT1A_ARATH Amino acid transporter AVT1A	55.100%	Swiss-Prot	High
`F4JE35`	Arabidopsis thaliana	sp\|F4JE35\|AVT1B_ARATH Amino acid transporter AVT1B	41.500%	Swiss-Prot	Medium
`F4IUW3`	Arabidopsis thaliana	sp\|F4IUW3\|AVT1C_ARATH Amino acid transporter AVT1C	39.400%	Swiss-Prot	Medium
`Q8GYS4`	Arabidopsis thaliana	sp\|Q8GYS4\|AVT1D_ARATH Amino acid transporter AVT1D	40.900%	Swiss-Prot	Medium
`Q1PER9`	Arabidopsis thaliana	sp\|Q1PER9\|AVT1G_ARATH Amino acid transporter AVT1G	37.400%	Swiss-Prot	Medium

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