LXL04_036221 | RubberDandelionOmics

Gene overview

LXL04_036221

Reference: OH-1004 Chr: Chr08 Coordinates: 38116383-38119474 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1695 bp · LXL04_036221|LXL04_036221|OH1004|cDNA

ATGGCGGGTAAAGCGAAGGAAACAGATTATTTCTTGATCGAAGACGAGTATGATGACAACGAGAACGATGATCTAGAAGCAAACAACAGTGATGAAAATGATGATGATGACAACGACGACGTTTCCAGTGGTGAATCGTCTATTTCTCAATCAGCTGGTCAATGGCCTCAAAGTTACAAGTATACACTCGATTCCTACTCAATTTCAGCTACCCCAAGTGTGGGATTCCTTAGACGCCCATCGGGTTCTATATATTCTAT...

CDS

Download CDS FASTA

1695 bp · LXL04_036221|LXL04_036221|OH1004|CDS

ATGGCGGGTAAAGCGAAGGAAACAGATTATTTCTTGATCGAAGACGAGTATGATGACAACGAGAACGATGATCTAGAAGCAAACAACAGTGATGAAAATGATGATGATGACAACGACGACGTTTCCAGTGGTGAATCGTCTATTTCTCAATCAGCTGGTCAATGGCCTCAAAGTTACAAGTATACACTCGATTCCTACTCAATTTCAGCTACCCCAAGTGTGGGATTCCTTAGACGCCCATCGGGTTCTATATATTCTAT...

Protein

Download Protein FASTA

564 aa · LXL04_036221|LXL04_036221|OH1004|PROTEIN

MAGKAKETDYFLIEDEYDDNENDDLEANNSDENDDDDNDDVSSGESSISQSAGQWPQSYKYTLDSYSISATPSVGFLRRPSGSIYSMYEPDIDSSNINFGDNIKSKLLIECSKVFSKEDVDRISRKISTWSGRGTLPDQLLGELPITFGCSVTQTVFNSVNVMVGVGVLSMPNTIAQAGWAGVGMLLLLGAICCYTAYLMKLCFESRDTIQTYPDIGEAAFGKYGRLLIAIILYTSLYAYCVEFIILEGDNLTSLFPSAS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036221`
TK1151 ID	TkA04G062590
OH-1004 ID	LXL04_036221
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.900
Protein coverage (%)	TK1151 94.600 / OH-1004 90.603 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036221

Location Chr08:38116383-38119474 (+)

Description Similar to AVT1A: Amino acid transporter AVT1A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g41190`	Amino acid transporter AVT1A.	No verified direct reference in this release
`At2g39130`	Amino acid transporter AVT1C.	No verified direct reference in this release
`At3g54830`	Amino acid transporter AVT1B.	No verified direct reference in this release
`At5g02180`	Amino acid transporter AVT1D.	No verified direct reference in this release
`At3g09340`	Amino acid transporter AVT1F.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036221 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0003333 amino acid transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0031090 organelle membrane Cellular Component

GO:0015171 amino acid transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G39130

ath:AT2G41190

ath:AT3G09340

ath:AT3G54830

ath:AT5G02180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.402

Rank 1 · LXL04_036221 · OH-1004

Cell membrane0.221

Rank 2 · LXL04_036221 · OH-1004

Endoplasmic reticulum0.203

Rank 3 · LXL04_036221 · OH-1004

Cytoplasm0.144

Rank 4 · LXL04_036221 · OH-1004

Golgi apparatus0.142

Rank 5 · LXL04_036221 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01490.25Aa_trans151-509 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036221	`PF01490.25`	Aa_trans	151	509	1.5e-60	205.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80668`	Arabidopsis thaliana	Amino acid transporter AVT1A	52.778%	Swiss-Prot	strong database homology
`F4IUW3`	Arabidopsis thaliana	Amino acid transporter AVT1C	37.951%	Swiss-Prot	moderate database homology
`F4JE35`	Arabidopsis thaliana	Amino acid transporter AVT1B	39.087%	Swiss-Prot	moderate database homology
`Q8GYS4`	Arabidopsis thaliana	Amino acid transporter AVT1D	38.462%	Swiss-Prot	moderate database homology
`F4IZW8`	Arabidopsis thaliana	Amino acid transporter AVT1F	37.718%	Swiss-Prot	moderate database homology

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