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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G060700
Reference: TK1151 Chr: Chr04 Coordinates: 16211851-16221868 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6316 bp · TkA04G060700|TK1151|cDNA

ATTTTATTTAGAAACGACAACATTACAAAAAGAAATATCCAAACCCTTTTCCTTTTTCCTTTTGGAAGAAAATAATTTTATTTCTCTGTTGACGGAACACCGTAACGATTGAGGGGAGGCGGAGTATGGAGACACTCGTCCGTCAACACCAACCTCCAAATGTGACAATTCCAACTTCTTCTTCTTCTTCCACAATACGCAGTCCTTTATTCCCTTCCTCTCTCACACAGTTTCACCCAAAAACACACTCTGGCGTTTGC...

CDS

Download CDS FASTA

5619 bp · TkA04G060700|TK1151|CDS

ATGGAGGAACGAACAAAGGAGAAGAAGATGAGTAGTAGTTCAGGGAGACAACTGAAGGCCATGCTTCGGAAGAACTGGCTTCTCAAAATTCGTCATCCTTATATTACACTTGCCGAGATTCTGCTTCCATTGGTGGTGATGGTGATGCTAATGGCTGTAAGGACACAAGTTGATACAACAATCCATCCTGCTCAATCGTACATTCAGAAAGATACATTTGTGGAAGTGGGGAAGAGCAGTATATCTCCAACTTTTAATCA...

Protein

Download Protein FASTA

1872 aa · TkA04G060700|TK1151|PROTEIN

MEERTKEKKMSSSSGRQLKAMLRKNWLLKIRHPYITLAEILLPLVVMVMLMAVRTQVDTTIHPAQSYIQKDTFVEVGKSSISPTFNQVLQSLLANGEYLAFAPNTSDTRTMINILSYKFPLMQMVTKVYKDELELETYLKSNVYASCSEVKNCSNPKIRGAVVFHGQGPYLYDYSIRLNHTWAFSGFPDIKSIMDINGPYVNDLELGLNQIPILQYGYSGFLTLQQVMDSFIVFYAQRKVADVAGGKDTKYLVPNSLKIP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G060700
TK1151 IDTkA04G060700
OH-1004 IDLXL04_036248
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 95.025
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G060700
LocationChr04:16211851-16221868 (+)
DescriptionSimilar to ABCA1: ABC transporter A family member 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g41700 ABC transporter A family member 1. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036248 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006855 xenobiotic transmembrane transport Biological Process
GO:0006869 lipid transport Biological Process
GO:0009410 response to xenobiotic stimulus Biological Process
GO:0010875 positive regulation of cholesterol efflux Biological Process
GO:0015914 phospholipid transport Biological Process
GO:0031340 positive regulation of vesicle fusion Biological Process
GO:0032464 positive regulation of protein homooligomerization Biological Process
GO:0042908 xenobiotic transport Biological Process
GO:0043129 surfactant homeostasis Biological Process
GO:0046470 phosphatidylcholine metabolic process Biological Process
GO:0046471 phosphatidylglycerol metabolic process Biological Process
GO:0046618 xenobiotic export from cell Biological Process
KEGG gene cross-reference
ath:AT2G41700
hsa:21
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.372
Rank 1 · TkA04G060700 · TK1151
Lysosome / Vacuole0.298
Rank 2 · TkA04G060700 · TK1151
Cytoplasm0.212
Rank 3 · TkA04G060700 · TK1151
Endoplasmic reticulum0.172
Rank 4 · TkA04G060700 · TK1151
Golgi apparatus0.166
Rank 5 · TkA04G060700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01061ABC2_membrane16-60 aa
PF12698ABC2_membrane_337-486 aa
PF01061ABC2_membrane285-407 aa
PF01061ABC2_membrane451-484 aa
PF03193RsgA_GTPase556-602 aa
PF01078Mg_chelatase565-610 aa
PF00005ABC_tran571-714 aa
PF13514AAA_27573-604 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G060700PF01061ABC2_membrane16600.009516.2
TkA04G060700PF12698ABC2_membrane_3374861.4e-61209.3
TkA04G060700PF01061ABC2_membrane2854070.009516.2
TkA04G060700PF01061ABC2_membrane4514840.009516.2
TkA04G060700PF03193RsgA_GTPase5566020.005117.4
TkA04G060700PF01078Mg_chelatase5656100.2311.6
TkA04G060700PF00005ABC_tran5717141.5e-58198.0
TkA04G060700PF13514AAA_275736040.2611.6
TkA04G060700PF13476AAA_235766000.01316.9
TkA04G060700PF20720nSTAND35766020.0215.3
TkA04G060700PF13555AAA_295786080.001519.0
TkA04G060700PF02463SMC_N5795980.001219.0
TkA04G060700PF13175AAA_155796210.004117.4
TkA04G060700PF13604AAA_305796110.06413.7
TkA04G060700PF13401AAA_225806040.01316.6
TkA04G060700PF04310MukB5806070.1212.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84M24Arabidopsis thalianasp|Q84M24|AB1A_ARATH ABC transporter A family member 170.400%Swiss-ProtHigh

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