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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G048610
Reference: TK1151 Chr: Chr04 Coordinates: 13039553-13041721 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1950 bp · TkA04G048610|TK1151|cDNA

ATGGTTGAAGATATTTCACTAGAGTTACGTTTCAATAATTTGAGGGTTGATGACAATTTAGTTGGCATGGAGAGGCGGATAAGGGGTATTGTTTCATCTTTAGAAATGGGTGACAAAGATGTTCGTATGATAGGGATCAAGGGGATTGGAGGCGGTGGGAAGACGACTTTGGCCAAAGCTGTTTTTGACAAAATATGTTTTTCATTTGAAGGTAAAATCTTTGTTGAGAATGTTAGGAACGTTTCGTCGTCTGTTGGGTT...

CDS

Download CDS FASTA

1950 bp · TkA04G048610|TK1151|CDS

ATGGTTGAAGATATTTCACTAGAGTTACGTTTCAATAATTTGAGGGTTGATGACAATTTAGTTGGCATGGAGAGGCGGATAAGGGGTATTGTTTCATCTTTAGAAATGGGTGACAAAGATGTTCGTATGATAGGGATCAAGGGGATTGGAGGCGGTGGGAAGACGACTTTGGCCAAAGCTGTTTTTGACAAAATATGTTTTTCATTTGAAGGTAAAATCTTTGTTGAGAATGTTAGGAACGTTTCGTCGTCTGTTGGGTT...

Protein

Download Protein FASTA

649 aa · TkA04G048610|TK1151|PROTEIN

MVEDISLELRFNNLRVDDNLVGMERRIRGIVSSLEMGDKDVRMIGIKGIGGGGKTTLAKAVFDKICFSFEGKIFVENVRNVSSSVGLLSLQKQVLSDVLKDTSSNIGSVHEGKSVMRKMLCGKRLLLILDDVDHLEQLEALAGGLDWFLPGSRIIITTRDEQVLVAHGVKCIHDVNLLSQDEALCLFSRYTFRRDIPIQSYDKLSLQVVHYAAGLPLTIRVLGSFLCGKDELEWKDALRRLKTIPLQATLEKLELSYTGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G048610
TK1151 IDTkA04G048610
OH-1004 IDLXL04_014745
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)63.500
Protein coverage (%)TK1151 93.374 / OH-1004 66.261
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G048610
LocationChr04:13039553-13041721 (+)
DescriptionSimilar to RPV1: Disease resistance protein RPV1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g64070 TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Leptosphaeria maculans (blackleg disease).
Transgressive segregation reveals two Arabidopsis TIR-NB-LRR resistance genes effective against Leptosphaeria maculans, causal agent of blackleg disease.2006 · DOI: 10.1111/j.1365-313x.2006.02688.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014745 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003953 NAD+ nucleosidase activity Molecular Function
GO:0042803 protein homodimerization activity Molecular Function
GO:0043531 ADP binding Molecular Function
GO:0050135 NADP+ nucleosidase activity Molecular Function
GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.461
Rank 1 · TkA04G048610 · TK1151
Nucleus0.305
Rank 2 · TkA04G048610 · TK1151
Cell membrane0.231
Rank 3 · TkA04G048610 · TK1151
Endoplasmic reticulum0.096
Rank 4 · TkA04G048610 · TK1151
Extracellular0.042
Rank 5 · TkA04G048610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00560LRR_16-15 aa
PF13516LRR_66-14 aa
PF13855LRR_87-15 aa
PF00931NB-ARC27-194 aa
PF13173AAA_1442-139 aa
PF05729NACHT43-190 aa
PF13401AAA_2243-141 aa
PF17331GFD190-102 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G048610PF00560LRR_16150.008716.7
TkA04G048610PF13516LRR_66140.710.8
TkA04G048610PF13855LRR_87152.7e-1143.7
TkA04G048610PF00931NB-ARC271942.4e-2383.3
TkA04G048610PF13173AAA_14421390.212.4
TkA04G048610PF05729NACHT431902.8e-0524.7
TkA04G048610PF13401AAA_22431410.004418.1
TkA04G048610PF17331GFD1901020.1712.8
TkA04G048610PF17331GFD12212360.1712.8
TkA04G048610PF13516LRR_62492630.710.8
TkA04G048610PF12799LRR_42502621.4e-1454.5
TkA04G048610PF13855LRR_82502682.7e-1143.7
TkA04G048610PF00560LRR_12502610.008716.7
TkA04G048610PF23282WHD_ROQ12633311.5e-1454.6
TkA04G048610PF17331GFD13003080.1712.8
TkA04G048610PF13173AAA_143043470.212.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4I594Arabidopsis thalianasp|F4I594|RLM1A_ARATH Disease resistance protein RML1A33.200%Swiss-ProtMedium

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