LXL04_014745 | RubberDandelionOmics

Gene overview

LXL04_014745

Reference: OH-1004 Chr: Chr03 Coordinates: 56223928-56227073 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2715 bp · LXL04_014745|LXL04_014745|OH1004|cDNA

ATGACGTCTTCTTCAACGTCATCCGCACAGAAGAGCTATAAGTATGACGTGTTTTTGAGTTTTAGAGGCGAAGACACTCGTAAGaattttgttgatcatctttATGCAGCTCTTGAACTTCAAGGTATTCATACTTTCAAGGATGATGAGAGAATTGAGAAAGGAAAGAAGATCAACGATGAGCTTTTAAAATCCATCGAAGAGTCAAAATTTTACATAGTTGTCTTCTCTAAGAACTATGCAGCTTCCGCTTGGTGTTT...

CDS

Download CDS FASTA

2715 bp · LXL04_014745|LXL04_014745|OH1004|CDS

ATGACGTCTTCTTCAACGTCATCCGCACAGAAGAGCTATAAGTATGACGTGTTTTTGAGTTTTAGAGGCGAAGACACTCGTAAGAATTTTGTTGATCATCTTTATGCAGCTCTTGAACTTCAAGGTATTCATACTTTCAAGGATGATGAGAGAATTGAGAAAGGAAAGAAGATCAACGATGAGCTTTTAAAATCCATCGAAGAGTCAAAATTTTACATAGTTGTCTTCTCTAAGAACTATGCAGCTTCCGCTTGGTGTTT...

Protein

Download Protein FASTA

904 aa · LXL04_014745|LXL04_014745|OH1004|PROTEIN

MTSSSTSSAQKSYKYDVFLSFRGEDTRKNFVDHLYAALELQGIHTFKDDERIEKGKKINDELLKSIEESKFYIVVFSKNYAASAWCLDEIVKIMECQKAIEQIVYPVFYDVDPCEVRKQLGPVGEAFSRHNKNVEVGKWRKAMKEASNLAGWDLRNTADGHEAKVINKIIKKISFELSFNNLEVDRKLIGMESRIKDIVSLMKMGIEDVRMIGIKGIGGGGKTTLARAVFDKICVSFEGKSFVENVREESKPSMSGLRSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014745`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014745

Location Chr03:56223928-56227073 (+)

Description Similar to RPV1: Disease resistance protein RPV1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g44510`	TIR-NB-LRR receptor-like protein that contributes to disease resistance induced by the Pseudomonas syringae type III effector AvrB.	Arabidopsis TAO1 is a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB.2008 · DOI: 10.1073/pnas.0802157105

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_014745 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0019677 NAD+ catabolic process Biological Process

GO:0043068 positive regulation of programmed cell death Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0003953 NAD+ nucleosidase activity Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

GO:0043531 ADP binding Molecular Function

GO:0050135 NADP+ nucleosidase activity Molecular Function

GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.406

Rank 1 · LXL04_014745 · OH-1004

Cell membrane0.379

Rank 2 · LXL04_014745 · OH-1004

Nucleus0.270

Rank 3 · LXL04_014745 · OH-1004

Endoplasmic reticulum0.078

Rank 4 · LXL04_014745 · OH-1004

Plastid0.043

Rank 5 · LXL04_014745 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582.26TIR14-176 aa

PF13676.12TIR_217-114 aa

PF00931.29NB-ARC201-364 aa

PF23282.2WHD_ROQ1433-501 aa

PF23286.1LRR_13684-758 aa

PF25019.1LRR_R13L1-DRL21702-758 aa

PF23598.2LRR_14706-751 aa

PF23598.2LRR_14729-850 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014745	`PF01582.26`	TIR	14	176	2.2e-52	178.2
LXL04_014745	`PF13676.12`	TIR_2	17	114	1.7e-17	64.7
LXL04_014745	`PF00931.29`	NB-ARC	201	364	3.6e-19	69.7
LXL04_014745	`PF23282.2`	WHD_ROQ1	433	501	3.2e-15	56.8
LXL04_014745	`PF23286.1`	LRR_13	684	758	5.4e-10	40.0
LXL04_014745	`PF25019.1`	LRR_R13L1-DRL21	702	758	1.7e-09	38.4
LXL04_014745	`PF23598.2`	LRR_14	706	751	2.3e-32	112.8
LXL04_014745	`PF23598.2`	LRR_14	729	850	2.3e-32	112.8
LXL04_014745	`PF13855.13`	LRR_8	734	779	3e-15	56.4
LXL04_014745	`PF12799.14`	LRR_4	819	857	4.2e-14	53.0
LXL04_014745	`PF23598.2`	LRR_14	836	892	2.3e-32	112.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FI14`	Arabidopsis thaliana	Disease resistance protein TAO1	33.553%	Swiss-Prot	moderate database homology

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