RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G031070
Reference: TK1151 Chr: Chr04 Coordinates: 8193527-8194664 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

801 bp · TkA04G031070|TK1151|cDNA

ATGTTCCGATCATTGGCCGAGCGTTACCATGAAGCCAAAGTTGAGTTGAGGAAGAAACCACCTTCCGCCATGACATCTCCTGATCGGAGATTATCTCGTCGTTTATCAGAGATTCCAAATTTTGATTATTTTAAAGCAGGATATGAAACTCCAACAAATGAATCCGAGTCGGATTCAGATGATTCGATTTTCCAAAGCTATTCGAATTCGTCAAATTACAGACGATTGCGTAAGAAGATCGTTGAATTGGAGGCTGAACT...

CDS

Download CDS FASTA

801 bp · TkA04G031070|TK1151|CDS

ATGTTCCGATCATTGGCCGAGCGTTACCATGAAGCCAAAGTTGAGTTGAGGAAGAAACCACCTTCCGCCATGACATCTCCTGATCGGAGATTATCTCGTCGTTTATCAGAGATTCCAAATTTTGATTATTTTAAAGCAGGATATGAAACTCCAACAAATGAATCCGAGTCGGATTCAGATGATTCGATTTTCCAAAGCTATTCGAATTCGTCAAATTACAGACGATTGCGTAAGAAGATCGTTGAATTGGAGGCTGAACT...

Protein

Download Protein FASTA

266 aa · TkA04G031070|TK1151|PROTEIN

MFRSLAERYHEAKVELRKKPPSAMTSPDRRLSRRLSEIPNFDYFKAGYETPTNESESDSDDSIFQSYSNSSNYRRLRKKIVELEAELRKVQMEHEENRSNSEIEYYAEELRMANEKITSLEEEIVRLRMKLQNYESFEHSRDDISDESNLKMDREGLASRISELEEEMSLKDDQMDEMNDRVEKLHLENQKSINYADELRNRSREMKKMIKKKQAMIEEAAEEKRQAVRQLCYTLEHYRNAYQMLRQDLLEQKKPVMASQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G031070
TK1151 IDTkA04G031070
OH-1004 IDLXL04_036653
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)68.300
Protein coverage (%)TK1151 98.872 / OH-1004 52.521
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G031070
LocationChr04:8193527-8194664 (+)
DescriptionSimilar to NET4B: Protein NETWORKED 4B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036653 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005774 vacuolar membrane Cellular Component
GO:0005856 cytoskeleton Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0003779 actin binding Molecular Function
GO:0051015 actin filament binding Molecular Function
KEGG gene cross-reference
ath:AT1G03080
ath:AT2G30500
ath:AT3G22790
ath:AT4G14760
ath:AT5G58320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.641
Rank 1 · TkA04G031070 · TK1151
Nucleus0.306
Rank 2 · TkA04G031070 · TK1151
Cell membrane0.110
Rank 3 · TkA04G031070 · TK1151
Mitochondrion0.046
Rank 4 · TkA04G031070 · TK1151
Golgi apparatus0.040
Rank 5 · TkA04G031070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13334DUF409439-89 aa
PF20237DUF659467-141 aa
PF28175T4SS_LegC2C768-139 aa
PF25762HAUS168-136 aa
PF19962EAD969-93 aa
PF29997SPC25_N70-133 aa
PF13339AATF-Che170-92 aa
PF26052BRE1B71-99 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G031070PF13334DUF409439890.2612.4
TkA04G031070PF20237DUF6594671410.3611.4
TkA04G031070PF28175T4SS_LegC2C7681390.679.5
TkA04G031070PF25762HAUS1681361.29.6
TkA04G031070PF19962EAD969930.4511.0
TkA04G031070PF29997SPC25_N701330.07314.1
TkA04G031070PF13339AATF-Che170922.89.2
TkA04G031070PF26052BRE1B71999.26.8
TkA04G031070PF30907IPGA1_CC721010.1413.2
TkA04G031070PF18455GBR2_CC72922.88.6
TkA04G031070PF29075NOCA1_mid721903.78.1
TkA04G031070PF08702Fib_alpha721284.18.3
TkA04G031070PF07926TPR_MLP1_2721228.97.1
TkA04G031070PF30842LEKR1731353.28.8
TkA04G031070PF04102SlyX74995.08.6
TkA04G031070PF14077WDR18_C75900.04214.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser