Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1512 bp · TkA04G029700|TK1151|cDNA
TTTCGACCACCTAAATGAAGCTCCCAATTTTGAAAACCTCTTTCCTTTATATTATAAAAATCCTTCAAAACTGATTTCAAAATACACCTTTTAAAATAAAGTTCTATGTAATTCGTTTTTAAACAAACAAAGAGTGTAGATCCGCTTCAAGAAAACCCGTAGTATACATTCGGATTCACACTCTTCCTCCCCCTTTTAATCTTCTGCTAATTCTCACCCCCAAACGCATCCTCCATAGCCGTCTCAGACCTCCATTAGAA...
903 bp · TkA04G029700|TK1151|CDS
ATGTCTTGGTGCACCATTGAGTCTGATCCGGGTGTTTTCACCGAACTTATACAACAAATGCAAGTAAAAGGCGTGCAGGTTGAAGAGTTATATTCTCTAGACATTGACTCTCTAAACAGTCTCAGGCCAGTTTACGGTTTAATCTTCCTATTCAAATGGCGTGCTGGTGAAAAAGACGAACGCCTCGTCATCAAAGACCCAAACCCTAATTTGTTCTTCGCTAGCCAGGTCATAAACAACGCATGCGCGACACAAGCGAT...
Protein
Download Protein FASTA300 aa · TkA04G029700|TK1151|PROTEIN
MSWCTIESDPGVFTELIQQMQVKGVQVEELYSLDIDSLNSLRPVYGLIFLFKWRAGEKDERLVIKDPNPNLFFASQVINNACATQAILSILLNCPEVDIGPELTALKDFSKNFPPELKGLAINNSDAIRTAHNSFARPEPFIPDDPQKPATKDDDVYHFISYIPVDGTLYELDGLKEGPISLGPCDDSNWLDLARPVIQARIEKYSRSEIRFNLLAVIRNRKEMYTVELKESLMEVNVGIEGATERILVEEEKFRKWRTE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G029700 |
|---|---|
| TK1151 ID | TkA04G029700 |
| OH-1004 ID | LXL04_036190 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 26.200 |
| Protein coverage (%) | TK1151 71.667 / OH-1004 92.704Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G029700 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:7854170-7857454 (-) | |||||||||
| Description | Similar to UCH3: Ubiquitin carboxyl-terminal hydrolase 3 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0016567 protein ubiquitination Biological Process GO:0016579 protein deubiquitination Biological Process GO:0030163 protein catabolic process Biological Process GO:0032869 cellular response to insulin stimulus Biological Process GO:0043687 post-translational protein modification Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0004843 cysteine-type deubiquitinase activity Molecular Function GO:0008233 peptidase activity Molecular Function GO:0019784 deNEDDylase activity Molecular Function GO:0043130 ubiquitin binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT4G17510 bta:520170 hsa:7347 rno:498560 ssc:768115 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01088Peptidase_C123-203 aaPF18031UCH_C242-285 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G029700 | PF01088 | Peptidase_C12 | 3 | 203 | 3.7e-66 | 223.6 |
| TkA04G029700 | PF18031 | UCH_C | 242 | 285 | 7.5e-19 | 68.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.