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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA04G029700
Query referenceTK1151
LocationChr04:7854170-7857454 (-)
DescriptionSimilar to UCH3: Ubiquitin carboxyl-terminal hydrolase 3 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_036190 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 13 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g65650 Ubiquitin-protein hydrolase involved in the release of ubiquitin attached via both peptide and isopeptide linkages.
Ubiquitin C-terminal hydrolases 1 and 2 affect shoot architecture in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2007.03154.x
Evidence that the Arabidopsis Ubiquitin C-terminal Hydrolases 1 and 2 associate with the 26S proteasome and the TREX-2 complex.2012 · DOI: 10.4161/psb.21899
At5g16310 Ubiquitin-protein hydrolase involved in the release of ubiquitin attached via both peptide and isopeptide linkages.
Ubiquitin C-terminal hydrolases 1 and 2 affect shoot architecture in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2007.03154.x
Evidence that the Arabidopsis Ubiquitin C-terminal Hydrolases 1 and 2 associate with the 26S proteasome and the TREX-2 complex.2012 · DOI: 10.4161/psb.21899

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006511ubiquitin-dependent protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.532; coverage=99.142; evalue=4.18e-117; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.345; coverage=96.996; evalue=4.12e-68; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016579protein deubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.788; coverage=96.996; evalue=9.35e-69; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030163protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.532; coverage=99.142; evalue=4.18e-117; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032869cellular response to insulin stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.053; coverage=97.854; evalue=2.01e-66; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043687post-translational protein modificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.345; coverage=96.996; evalue=4.12e-68; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.532; coverage=99.142; evalue=4.18e-117; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.345; coverage=96.996; evalue=4.12e-68; UniProt GO evidence=IDA:HPAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004843cysteine-type deubiquitinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.532; coverage=99.142; evalue=4.18e-117; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008233peptidase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.345; coverage=96.996; evalue=4.12e-68; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019784deNEDDylase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.345; coverage=96.996; evalue=4.12e-68; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043130ubiquitin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.345; coverage=96.996; evalue=4.12e-68; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0101005deubiquitinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.053; coverage=97.854; evalue=2.01e-66; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G17510KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.532; coverage=99.142; evalue=4.18e-117UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbta:520170KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.788; coverage=96.996; evalue=9.35e-69UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:7347KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.345; coverage=96.996; evalue=4.12e-68UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGrno:498560KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.053; coverage=97.854; evalue=2.01e-66UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGssc:768115KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.807; coverage=97.854; evalue=2.34e-68UniProtKB/Swiss-Prot DAT 2026 current_release