TkA04G027320 | RubberDandelionOmics

Gene overview

TkA04G027320

Reference: TK1151 Chr: Chr04 Coordinates: 7227398-7228105 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

708 bp · TkA04G027320|TK1151|cDNA

ATGGCATCGCTCCGCCGTTCCTCCCCCTTCTTCTTCATCCTTCTCACATTAACATCTGTAATTCTACTATCATCTCCGGTACATTCCCTCACCCGCACATCGGAAAAGTTCGCAAACAAAAAGCCCTATTCAAATTGCACCGACCTACCCACCCTCAATTCCACCCTCCACTGGACTTTCACCCCACGAAACTCCTCCCTCTCCGTCGCATTCACCGCACCTCCGGCGACACCGAACGGGTGGATCTCATGGGCAATTAA...

CDS

Download CDS FASTA

708 bp · TkA04G027320|TK1151|CDS

ATGGCATCGCTCCGCCGTTCCTCCCCCTTCTTCTTCATCCTTCTCACATTAACATCTGTAATTCTACTATCATCTCCGGTACATTCCCTCACCCGCACATCGGAAAAGTTCGCAAACAAAAAGCCCTATTCAAATTGCACCGACCTACCCACCCTCAATTCCACCCTCCACTGGACTTTCACCCCACGAAACTCCTCCCTCTCCGTCGCATTCACCGCACCTCCGGCGACACCGAACGGGTGGATCTCATGGGCAATTAA...

Protein

Download Protein FASTA

235 aa · TkA04G027320|TK1151|PROTEIN

MASLRRSSPFFFILLTLTSVILLSSPVHSLTRTSEKFANKKPYSNCTDLPTLNSTLHWTFTPRNSSLSVAFTAPPATPNGWISWAINPTKTGMLGSQALIAFKNSNGSMVVRTYNLSSYASIEEGKISFEVPESSAEFSDGVMKLFATVKLPETMTEVNHVWQVGGSVKDGVPVKHGFMPANLKAMGKLELVGKVGSNGTAAGSSPTVAPGTSAASGIAGIYVITILFSCLLGFF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G027320`
TK1151 ID	TkA04G027320
OH-1004 ID	LXL04_036726
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G027320

Location Chr04:7227398-7228105 (+)

Description Similar to AIR12: Auxin-induced in root cultures protein 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07390`	One-heme-containing cytochrome.	Auxin-responsive genes AIR12 code for a new family of plasma membrane b-type cytochromes specific to flowering plants.2009 · DOI: 10.1104/pp.109.139170
`At3g59070`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release
`At5g47530`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release
`At4g17280`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036726 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010102 lateral root morphogenesis Biological Process

GO:0030198 extracellular matrix organization Biological Process

GO:0080022 primary root development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0098552 side of membrane Cellular Component

KEGG gene cross-reference

ath:AT3G07390

ath:AT3G25290

ath:AT3G59070

ath:AT4G12980

ath:AT5G48750

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.775

Rank 1 · TkA04G027320 · TK1151

Endoplasmic reticulum0.095

Rank 2 · TkA04G027320 · TK1151

Cytoplasm0.087

Rank 3 · TkA04G027320 · TK1151

Extracellular0.073

Rank 4 · TkA04G027320 · TK1151

Lysosome / Vacuole0.053

Rank 5 · TkA04G027320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03351DOMON53-151 aa

PF04526DUF56893-191 aa

PF26809Phage_T4_gp13114-192 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G027320	`PF03351`	DOMON	53	151	0.0033	18.3
TkA04G027320	`PF04526`	DUF568	93	191	2.1e-31	109.3
TkA04G027320	`PF26809`	Phage_T4_gp13	114	192	0.22	11.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94BT2`	Arabidopsis thaliana	sp\|Q94BT2\|AIR12_ARATH Auxin-induced in root cultures protein 12	46.100%	Swiss-Prot	Medium
`Q9LYS9`	Arabidopsis thaliana	sp\|Q9LYS9\|B561H_ARATH Cytochrome b561 and DOMON domain-containing protein At3g59070	42.000%	Swiss-Prot	Medium
`Q9FGK4`	Arabidopsis thaliana	sp\|Q9FGK4\|B561J_ARATH Cytochrome b561 and DOMON domain-containing protein At5g47530	36.800%	Swiss-Prot	Medium
`Q8VYH6`	Arabidopsis thaliana	sp\|Q8VYH6\|B651B_ARATH Cytochrome b561 and DOMON domain-containing protein At4g17280	32.800%	Swiss-Prot	Medium

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