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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G027130
Reference: TK1151 Chr: Chr04 Coordinates: 7157087-7159130 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1841 bp · TkA04G027130|TK1151|cDNA

TAATTACCAGGGGGCAAATGTTACAATTTCTTAATTTTTATACAACCCACCCCTATATAAAACATGTAACTCCTATATCTCTTACACTCCTCCATCATCATTCCTTCTCTCTCTAAAACAAAACACCTTCATATGCTTCTTCGGTGCTTCTGAATTCCAAAATGAGAGATTCATATGAAAAGAAGCACATCTACAGTAGTATGTTCTACTGTGTGTAACTTTTTCTTGGCAACCGCACACCAAACATCATCATCATCTTC...

CDS

Download CDS FASTA

1434 bp · TkA04G027130|TK1151|CDS

ATGGCGAAAAGCGAGGTGTTTGAAGGGGATCCGAGCGTGGCGGTGGCGAAGGTCACGGCGGAGTTGAAGAAGGAACTGCATAGACTCGTGAAAGCGATTATTGAAGATTCCTCGTCGGAGGACGAAAATGGATTTGGATTTATTGATAGAGCGAATCAGACTTTGCAAGCTTTGAAGGAATTGAAAGAGGGAGGGAAACAACGATCTTCTTCGATTAAACGAATCAATGATAGTAACCGTAACAATAATGAAAGTTCGAC...

Protein

Download Protein FASTA

477 aa · TkA04G027130|TK1151|PROTEIN

MAKSEVFEGDPSVAVAKVTAELKKELHRLVKAIIEDSSSEDENGFGFIDRANQTLQALKELKEGGKQRSSSIKRINDSNRNNNESSTSVWASCPQEFRCPLSKELMRDPVILSTGQTYDRPFIQKWLKAGNRICPRTQQVLSHTILTPNQLVRDMITQWCKNRGVQFPGPIQYPEQDGLTEADRDLFLSLLKKMSSTQSEQKEAARTLRSLTKRMPSFRALFGESLEAIPQLLTPLTQTKSQTEIHPDLQEDLITTLLNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G027130
TK1151 IDTkA04G027130
OH-1004 IDLXL04_036733
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 96.169
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G027130
LocationChr04:7157087-7159130 (+)
DescriptionSimilar to PUB9: U-box domain-containing protein 9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g07360 Functions as an E3 ubiquitin ligase (By similarity).
Interactions between the S-domain receptor kinases and AtPUB-ARM E3 ubiquitin ligases suggest a conserved signaling pathway in Arabidopsis.2008 · DOI: 10.1104/pp.108.123380
At5g18320 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At5g18340 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At5g18330 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At5g01830 Functions as an E3 ubiquitin ligase. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036733 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0042631 cellular response to water deprivation Biological Process
GO:0048527 lateral root development Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0071215 cellular response to abscisic acid stimulus Biological Process
GO:0090333 regulation of stomatal closure Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G23030
ath:AT3G07360
ath:AT3G54850
ath:AT5G18320
dosa:Os06g0102700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.562
Rank 1 · TkA04G027130 · TK1151
Nucleus0.395
Rank 2 · TkA04G027130 · TK1151
Cell membrane0.171
Rank 3 · TkA04G027130 · TK1151
Endoplasmic reticulum0.051
Rank 4 · TkA04G027130 · TK1151
Lysosome / Vacuole0.041
Rank 5 · TkA04G027130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25808TPR_LAA1_C14-41 aa
PF24742ARM_CUL7_CUL919-90 aa
PF19443DAHL25-62 aa
PF04564U-box94-162 aa
PF11789zf-Nse95-135 aa
PF26474DUF8148_M118-144 aa
PF13513HEAT_EZ176-205 aa
PF24742ARM_CUL7_CUL9181-246 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G027130PF25808TPR_LAA1_C14410.002118.7
TkA04G027130PF24742ARM_CUL7_CUL919900.06514.0
TkA04G027130PF19443DAHL25629.86.5
TkA04G027130PF04564U-box941621.4e-2073.9
TkA04G027130PF11789zf-Nse951350.01116.2
TkA04G027130PF26474DUF8148_M1181440.08914.0
TkA04G027130PF13513HEAT_EZ1762050.5111.7
TkA04G027130PF24742ARM_CUL7_CUL91812460.06514.0
TkA04G027130PF25808TPR_LAA1_C1833070.002118.7
TkA04G027130PF26474DUF8148_M1832220.08914.0
TkA04G027130PF00514Arm1872123.2e-1349.9
TkA04G027130PF14726RTTN_N1882100.1513.6
TkA04G027130PF25598ARM_PUB1903631.5e-1454.8
TkA04G027130PF24768ARM_ARMC51943661.8e-0731.5
TkA04G027130PF19443DAHL1992669.86.5
TkA04G027130PF28349HSF2BP_C2042640.08414.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SRT0Arabidopsis thalianasp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 952.100%Swiss-ProtHigh
Q3E9F7Arabidopsis thalianasp|Q3E9F7|PUB46_ARATH Putative U-box domain-containing protein 4638.800%Swiss-ProtMedium
Q3E9F5Arabidopsis thalianasp|Q3E9F5|PUB48_ARATH U-box domain-containing protein 4833.300%Swiss-ProtMedium
Q3E9F6Arabidopsis thalianasp|Q3E9F6|PUB47_ARATH Putative U-box domain-containing protein 4731.900%Swiss-ProtMedium
Q9LZW3Arabidopsis thalianasp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 1630.800%Swiss-ProtMedium

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