Gene Card
Gene overview
cDNA / CDS / Protein Sequences
4305 bp · TkA04G000040|TK1151|cDNA
TTTTGATATACACAGGTAATTAAAGAACTCGGTGAAAGAAAAAGGAAGAAAATAATCCACGCGTTGGTGGCTTGTTGAGTCACCTGGTTCGAAATCGAGGGCTTGTCTCTTCTCCAACATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACATATAGATTTGTATACGTAACGCGATTTTCTTCAAATCCTCAGATTGGTATCTAAGTTAATTTCGTAATGTATTCATGTTCTCTTTGGTGATCAATCTGGTTC...
3654 bp · TkA04G000040|TK1151|CDS
ATGGCTTCAAATCCTCCATTTCAGGTGGAGGATACTGATGAAGATTTCTTTGATAAATTGGTCAATGATGATGATGATGATTATAAGTTGGGTCCATTATCCTCAGAGACGACCAAAATAGCTGATGGGAACGATTCTGATGATGCTAAAGCTTTTGCTAATTTAGGTATCAGTGATGTTGCAACTGTACTTGAAGATTTGGGGAAAGTAGGTGCAGGGGAAGAAGAAGAAGCGATTAATGGGGATGCCAAGCATACGTC...
Protein
Download Protein FASTA1217 aa · TkA04G000040|TK1151|PROTEIN
MASNPPFQVEDTDEDFFDKLVNDDDDDYKLGPLSSETTKIADGNDSDDAKAFANLGISDVATVLEDLGKVGAGEEEEAINGDAKHTSTDHGHLLATSKSFAFDSVSEEPNIEVAALEDYRGSLDDGCGGVTVKEVQWTAFGAEAVESEGNGFGSYNDFFTEIGDSCADEIVGKGGKLVSEEQKVVSDVVDDSISMHRKNVDEFQDLQTYGEQSRDGSQDPNSNWEDLYPGWKYDADSGQWYQVNESYENVDDLSNKAEVC...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G000040 |
|---|---|
| TK1151 ID | TkA04G000040 |
| OH-1004 ID | LXL04_026609 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 97.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G000040 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:13478-18668 (+) | |||||||||
| Description | Similar to SEC16B: Protein transport protein SEC16B homolog | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process GO:0007029 endoplasmic reticulum organization Biological Process GO:0007031 peroxisome organization Biological Process GO:0010628 positive regulation of gene expression Biological Process GO:0015031 protein transport Biological Process GO:0016559 peroxisome fission Biological Process GO:0070863 positive regulation of protein exit from endoplasmic reticulum Biological Process GO:0070973 protein localization to endoplasmic reticulum exit site Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005634 nucleus Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT5G47480 ath:AT5G47490 gga:424431 mmu:89867 rno:89868 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12932Sec16465-565 aaPF12931TPR_Sec16624-876 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G000040 | PF12932 | Sec16 | 465 | 565 | 1.1e-12 | 49.2 |
| TkA04G000040 | PF12931 | TPR_Sec16 | 624 | 876 | 3.9e-53 | 181.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.