How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp

Gene overview

TkA03G610700
Reference: TK1151 Chr: Chr03 Coordinates: 155086416-155087018 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

399 bp · TkA03G610700|TK1151|cDNA

ATGAAATCCCCACCATCATCAGAAATTAGTCGTATAAAAGGGCTCTTGCCATTTGGAAAGATACCTATCGGAATTCTCAACTGCAAGACGCTTCAACGCGTTGCTCTCAGCCGGAACAGATTTTCAGACGCCATCCCCCCTGAGATTTTCAGACGCCATCCCACTGCGTTTGGGTCACAAAATCGATGGACTCGAGATCCACCCTTCATCGTTTTCTTCATATCAAACGAACATGACCTCGTCGTCTTTATATCAAACCC...

399 bp · TkA03G610700|TK1151|CDS

ATGAAATCCCCACCATCATCAGAAATTAGTCGTATAAAAGGGCTCTTGCCATTTGGAAAGATACCTATCGGAATTCTCAACTGCAAGACGCTTCAACGCGTTGCTCTCAGCCGGAACAGATTTTCAGACGCCATCCCCCCTGAGATTTTCAGACGCCATCCCACTGCGTTTGGGTCACAAAATCGATGGACTCGAGATCCACCCTTCATCGTTTTCTTCATATCAAACGAACATGACCTCGTCGTCTTTATATCAAACCC...

132 aa · TkA03G610700|TK1151|PROTEIN

MKSPPSSEISRIKGLLPFGKIPIGILNCKTLQRVALSRNRFSDAIPPEIFRRHPTAFGSQNRWTRDPPFIVFFISNEHDLVVFISNPMRHPVQTKNDMIFHESDLAVLIWAGGGRLFRGGGVKTVKNEEEGR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G610700
TK1151 IDTkA03G610700
OH-1004 IDLXL04_021413
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)86.200
Protein coverage (%)TK1151 21.970 / OH-1004 17.791
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G610700
LocationChr03:155086416-155087018 (+)
DescriptionSimilar to HSP26-A: Probable glutathione S-transferase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021413 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006749 glutathione metabolic process Biological Process
GO:0009407 toxin catabolic process Biological Process
GO:0009408 response to heat Biological Process
GO:0009733 response to auxin Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009735 response to cytokinin Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009739 response to gibberellin Biological Process
GO:0009751 response to salicylic acid Biological Process
GO:0010038 response to metal ion Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT2G29420
ath:AT2G29490
ath:AT3G09270
gmx:100527851
nta:107802704
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.392
Rank 1 · TkA03G610700 · TK1151
Nucleus0.345
Rank 2 · TkA03G610700 · TK1151
Cell membrane0.142
Rank 3 · TkA03G610700 · TK1151
Mitochondrion0.110
Rank 4 · TkA03G610700 · TK1151
Extracellular0.086
Rank 5 · TkA03G610700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser