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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G610200
Reference: TK1151 Chr: Chr03 Coordinates: 154953766-154960314 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4420 bp · TkA03G610200|TK1151|cDNA

TCTTATTTATATAAAAGACTCTGGCATCGAGTCAACAACAAAAGGCAAAATGAGAAAAGAAAAAAAAAAAGAAAAACGAAAAAAGAAAACTCTCCATCGATTGACCAACGCGCCTCTCGTTTCTCGTCAGTCTCGGGCCTCTGGCTAGTCGCTTCTCTTCGTGGATTGACTAATAACATCGTCCCAAGGTTTCCTTCGATCAAGACATCCCTAGGGTTTTTCTTCCAAACCACCACAAGATTTTTCAATCAATCTTATTT...

CDS

Download CDS FASTA

3783 bp · TkA03G610200|TK1151|CDS

ATGGAGAATCCAATTGACATCGACAAGATAACAGAAACGTTGGAACCTGATGCAACTGGTGGCGGTGGATTACAATTGCCTGGGAAAGATAGGGTTGTCTTCAGACCGCCTGAGAGGAAATCATTACTAGGACTAGATGCCCTTGCAAGTGCAAAAAGAGCTGAAGGATCCTTTAAAGTTCCTAGAGAAAAAGTTTCTTCCATGATGTCATCTCTAGATGATGAGGTGGAAAAAACCACATCATCACTCACAGGTCTTGA...

Protein

Download Protein FASTA

1260 aa · TkA03G610200|TK1151|PROTEIN

MENPIDIDKITETLEPDATGGGGLQLPGKDRVVFRPPERKSLLGLDALASAKRAEGSFKVPREKVSSMMSSLDDEVEKTTSSLTGLDEVGSGVSSSGRNYTSRQYRDSSGSKTFGSESQINEEERVPRHGSNSNTRSEDVTPSSRSSRSSQHRSHRNDSADYDRRRNDSRDDRGSSRRYYSSDRDERDHVDPSPRYGKDYRDYGNKRSRYESSSRRTPGRSDWDDGRWEWEESPRHDSRHRQPSRSPMLLGASPDARLVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G610200
TK1151 IDTkA03G610200
OH-1004 IDLXL04_011679
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G610200
LocationChr03:154953766-154960314 (+)
DescriptionSimilar to CUV: Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g13010 Involved in pre-mRNA splicing by mediating structural transitions of the spliceosome during the catalytic step.
Phytophthora effector targets a novel component of small RNA pathway in plants to promote infection.2015 · DOI: 10.1073/pnas.1421475112

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011679 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000350 generation of catalytic spliceosome for second transesterification step Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0008380 RNA splicing Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010051 xylem and phloem pattern formation Biological Process
GO:0010467 gene expression Biological Process
GO:0031053 primary miRNA processing Biological Process
GO:0031334 positive regulation of protein-containing complex assembly Biological Process
GO:0033120 positive regulation of RNA splicing Biological Process
GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing Biological Process
GO:0045087 innate immune response Biological Process
KEGG gene cross-reference
ath:AT5G13010
bta:520046
cel:CELE_K03H1.2
hsa:9785
spo:2540006
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.902
Rank 1 · TkA03G610200 · TK1151
Cytoplasm0.177
Rank 2 · TkA03G610200 · TK1151
Mitochondrion0.024
Rank 3 · TkA03G610200 · TK1151
Cell membrane0.023
Rank 4 · TkA03G610200 · TK1151
Endoplasmic reticulum0.014
Rank 5 · TkA03G610200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06745ATPase44-98 aa
PF13476AAA_23360-426 aa
PF14532Sigma54_activ_2564-616 aa
PF25199nSTAND_NTPase5567-600 aa
PF00158Sigma54_activat567-603 aa
PF00437T2SSE569-600 aa
PF00270DEAD570-720 aa
PF20720nSTAND3570-597 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G610200PF06745ATPase44980.01115.9
TkA03G610200PF13476AAA_233604260.5611.5
TkA03G610200PF14532Sigma54_activ_25646160.03415.2
TkA03G610200PF25199nSTAND_NTPase55676000.004317.6
TkA03G610200PF00158Sigma54_activat5676030.2211.9
TkA03G610200PF00437T2SSE5696000.01514.7
TkA03G610200PF00270DEAD5707203.9e-0937.2
TkA03G610200PF20720nSTAND35705970.004817.3
TkA03G610200PF06745ATPase5706020.01115.9
TkA03G610200PF02562PhoH5705930.1612.2
TkA03G610200PF13191AAA_165716010.04914.9
TkA03G610200PF12775AAA_75736030.1412.4
TkA03G610200PF13245AAA_195757000.000222.2
TkA03G610200PF00005ABC_tran5755960.213.0
TkA03G610200PF04851ResIII5766890.02315.3
TkA03G610200PF13401AAA_225777102.1e-0628.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4K2E9Arabidopsis thalianasp|F4K2E9|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH773.400%Swiss-ProtHigh

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