TkA03G601210 | RubberDandelionOmics

Gene overview

TkA03G601210

Reference: TK1151 Chr: Chr03 Coordinates: 152662491-152667011 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2009 bp · TkA03G601210|TK1151|cDNA

ATACAAAGCAACAAGGTGTTATTTGCAACATTTCAAACGATGACAAAACTTTTATCAACACCACTGTTTCTCCTCCAGTGAAGGAGGCCAGCCACCAAACCAAAGGGAGCTGAGATTGTCTACAACGCAAGGGTTTTTTCGTTGTTCCAACTGTTCGTAGCTTCTTCTGCTTCTCCGTCACAACAAGAATCTCGCGTTCAAATTTACAAGAATTTGATCCCGTCTCCAACTTTGATTTTCAGATTTCACATAAAAACATC...

CDS

Download CDS FASTA

1257 bp · TkA03G601210|TK1151|CDS

ATGCCGGCTCATAAGTCGAAATCGGAGAAGAATGATCCAGAAAAACATTCACTGAGAGACCCCTACGATGTCCTCAGTGTTTCTCGCAACTCCACAGATCAAGAAATCAAAAGTGCTTATCGTAAATTGGCTTTGAAGTACCATCCTGACAAGAACGCAAATGACCCTAAAGCGACTGATATGTTCAATGAGATAACCTTCTCCTACAACATATTATCCGATCCTGATAAACGTCATCAATACGACACTGCTGGTTTTGA...

Protein

Download Protein FASTA

418 aa · TkA03G601210|TK1151|PROTEIN

MPAHKSKSEKNDPEKHSLRDPYDVLSVSRNSTDQEIKSAYRKLALKYHPDKNANDPKATDMFNEITFSYNILSDPDKRHQYDTAGFEAVDSKSQDLELDLSSLGAVNTMFAALFSKLGVPIKTTVSATLLEEALNGTVTTQPIELGQPIVRKVEKQCAHFYSVTITEKQAQAGLVCRVQSSDKSKFKLLYFDQEENGGLNLALQEDSAKTGKVTSAGMYFLGFPVYRLDPPSNSMGSVKDPDAVFFKKLDGFQPCEIHEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G601210`
TK1151 ID	TkA03G601210
OH-1004 ID	LXL04_011549
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	84.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G601210

Location Chr03:152662491-152667011 (+)

Description Similar to ATJ16: Chaperone protein dnaJ 16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g24120`	Plays a continuous role in plant development probably in the structural organization of compartments (By similarity).	No verified direct reference in this release
`At1g59980`	Plays a continuous role in plant development probably in the structural organization of compartments (By similarity).	No verified direct reference in this release
`At1g68370`	Plays a continuous role in plant development probably in the structural organization of compartments (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011549 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009737 response to abscisic acid Biological Process

GO:0009958 positive gravitropism Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0016020 membrane Cellular Component

GO:0008092 cytoskeletal protein binding Molecular Function

KEGG gene cross-reference

ath:AT1G24120

ath:AT1G59980

ath:AT1G68370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.614

Rank 1 · TkA03G601210 · TK1151

Nucleus0.244

Rank 2 · TkA03G601210 · TK1151

Cell membrane0.155

Rank 3 · TkA03G601210 · TK1151

Golgi apparatus0.130

Rank 4 · TkA03G601210 · TK1151

Endoplasmic reticulum0.100

Rank 5 · TkA03G601210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00226DnaJ20-82 aa

PF04353Rsd_AlgQ87-104 aa

PF00226DnaJ274-288 aa

PF28175T4SS_LegC2C7291-349 aa

PF27961CSNKA2IP318-376 aa

PF04353Rsd_AlgQ322-367 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G601210	`PF00226`	DnaJ	20	82	4.9e-26	91.3
TkA03G601210	`PF04353`	Rsd_AlgQ	87	104	0.062	14.0
TkA03G601210	`PF00226`	DnaJ	274	288	4.9e-26	91.3
TkA03G601210	`PF28175`	T4SS_LegC2C7	291	349	0.059	13.0
TkA03G601210	`PF27961`	CSNKA2IP	318	376	0.27	11.4
TkA03G601210	`PF04353`	Rsd_AlgQ	322	367	0.062	14.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8VXV4`	Arabidopsis thaliana	sp\|Q8VXV4\|DNJ16_ARATH Chaperone protein dnaJ 16	66.500%	Swiss-Prot	High
`Q6XL73`	Arabidopsis thaliana	sp\|Q6XL73\|DNJ39_ARATH Chaperone protein dnaJ 39	60.400%	Swiss-Prot	High
`Q9ZSY2`	Arabidopsis thaliana	sp\|Q9ZSY2\|DNJ15_ARATH Chaperone protein dnaJ 15	57.800%	Swiss-Prot	High

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