TkA03G596440 | RubberDandelionOmics

Gene overview

TkA03G596440

Reference: TK1151 Chr: Chr03 Coordinates: 151451691-151453340 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

726 bp · TkA03G596440|TK1151|cDNA

ATGGTCCTAGTTTGCATTCCGTCACAGGAGATGCTCCATGGATCTTTAGTGTTGCAGCAAGTAACACACGATAGAAGAATCGTTAATAAAGTCTCTTTCTTGGAGATGCTACTGTCTTCCGGGATGCCTAGACATAGCCTCGTGGAGCAAAAAGTTGTTCTATGTGACATTAATAGCAACACATTTTCAGTAAAAGCAGCTGGAGCCCTTGGGTGTATACTCCCACAAGGAAACAATGTCTCTCATATTGGACCATTACC...

CDS

Download CDS FASTA

726 bp · TkA03G596440|TK1151|CDS

ATGGTCCTAGTTTGCATTCCGTCACAGGAGATGCTCCATGGATCTTTAGTGTTGCAGCAAGTAACACACGATAGAAGAATCGTTAATAAAGTCTCTTTCTTGGAGATGCTACTGTCTTCCGGGATGCCTAGACATAGCCTCGTGGAGCAAAAAGTTGTTCTATGTGACATTAATAGCAACACATTTTCAGTAAAAGCAGCTGGAGCCCTTGGGTGTATACTCCCACAAGGAAACAATGTCTCTCATATTGGACCATTACC...

Protein

Download Protein FASTA

241 aa · TkA03G596440|TK1151|PROTEIN

MVLVCIPSQEMLHGSLVLQQVTHDRRIVNKVSFLEMLLSSGMPRHSLVEQKVVLCDINSNTFSVKAAGALGCILPQGNNVSHIGPLPVSALDTNDMNLVKTYQKSTKDIDGLPTCCCSAAIVLRLIAYGSGHIDPHKAIDPGLVYDISREDYFMIWCIISISTTNASCHANLTISELNYPPMAVQVDMNSAFVVSFPRTVRNVGEANSRYVASINGATNFHITVDPGNLQFTAVNQQSLLW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G596440`
TK1151 ID	TkA03G596440
OH-1004 ID	LXL04_011521
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	58.000
Protein coverage (%)	TK1151 81.743 / OH-1004 40.625 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G596440

Location Chr03:151451691-151453340 (-)

Description Similar to SBT4.3: Subtilisin-like protease SBT4.3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g15040`	Subtilisin-like protease SBT4.2.	No verified direct reference in this release
`At5g59130`	Subtilisin-like protease SBT4.11.	No verified direct reference in this release
`At5g58840`	Subtilisin-like protease SBT4.9.	No verified direct reference in this release
`At5g59190`	Subtilisin-like protease SBT4.3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011521 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0005576 extracellular region Cellular Component

GO:0004252 serine-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT3G46850

ath:AT5G59100

ath:AT5G59120

ath:AT5G59130

ath:AT5G59190

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.750

Rank 1 · TkA03G596440 · TK1151

Cytoplasm0.078

Rank 2 · TkA03G596440 · TK1151

Endoplasmic reticulum0.069

Rank 3 · TkA03G596440 · TK1151

Cell membrane0.051

Rank 4 · TkA03G596440 · TK1151

Lysosome / Vacuole0.047

Rank 5 · TkA03G596440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17766fn3_69-24 aa

PF17766fn3_6176-237 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G596440	`PF17766`	fn3_6	9	24	1.7e-13	51.3
TkA03G596440	`PF17766`	fn3_6	176	237	1.7e-13	51.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O23357`	Arabidopsis thaliana	sp\|O23357\|SBT42_ARATH Subtilisin-like protease SBT4.2	39.700%	Swiss-Prot	Low
`Q9FIG1`	Arabidopsis thaliana	sp\|Q9FIG1\|SBT4B_ARATH Subtilisin-like protease SBT4.11	35.200%	Swiss-Prot	Low
`Q9FIM5`	Arabidopsis thaliana	sp\|Q9FIM5\|SBT49_ARATH Subtilisin-like protease SBT4.9	33.800%	Swiss-Prot	Medium
`Q9FIF8`	Arabidopsis thaliana	sp\|Q9FIF8\|SBT43_ARATH Subtilisin-like protease SBT4.3	40.400%	Swiss-Prot	Low

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