TkA03G592980 | RubberDandelionOmics

Gene overview

TkA03G592980

Reference: TK1151 Chr: Chr03 Coordinates: 150579828-150582531 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2142 bp · TkA03G592980|TK1151|cDNA

AAAAACTACTGGATATTTCGTTAATTGGTCAAGACTGAAACAAAATTATAAAAATACATTATTTCTCAAAGTAAATAACACAATATTTTTTAATAAACTTAATGATTTTTATTAAATTTGCAAAAGCTTTGTCCAAGCTCGTCGCAGAAGCCATTAGCCATGACCCAGTTTATATTATAGGGTATTTTTATAATAATGATTCATACATCCTATTCTACTGTTATAATTTTCTAATATGTAAGACTAAAATTTAACCCACA...

CDS

Download CDS FASTA

1179 bp · TkA03G592980|TK1151|CDS

ATGGCGACTTGTCTAAATCGAAGAACTGGTACTTTGCTATCACAGAAGCCTAGAATCCTCACCTCCTTCTTCGCCGAGAGATGGTATGGTATATTCAGTTCTTCCATTACCAAGGACCTTGCTCTAATCAAAGATGGGTTAACAGCTTCTTTCTCCACATGCTCAGAGTCAACCAATGAGAATCATGAACCACTCCAACATCAGTTACCACCAAAAACCTGTCAAGATCTATTCACACAATGGGGATGCACCGACCACGA...

Protein

Download Protein FASTA

392 aa · TkA03G592980|TK1151|PROTEIN

MATCLNRRTGTLLSQKPRILTSFFAERWYGIFSSSITKDLALIKDGLTASFSTCSESTNENHEPLQHQLPPKTCQDLFTQWGCTDHETSQIFERMPSLHKSNLDKLQSKLKILQDLEFTSSDLVKIISCRPRFLQSKLDTSLSERVHYLESVFGSKLTLQKAVLRNPSILTYDLKKVIKPTIELYKSMGITGPDLTLMILSRPTIITRTSLTPEKLDYIKRTGASKDSKMYKYVVTIIAISRIETIREKMANLEKFGFLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G592980`
TK1151 ID	TkA03G592980
OH-1004 ID	LXL04_011486
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G592980`
Location	Chr03:150579828-150582531 (+)
Description	Similar to Os05g0404000: Transcription termination factor MTERF4, chloroplastic
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_011486` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006353 DNA-templated transcription termination Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0008380 RNA splicing Biological Process GO:0009651 response to salt stress Biological Process GO:0009658 chloroplast organization Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0010343 singlet oxygen-mediated programmed cell death Biological Process GO:0032502 developmental process Biological Process GO:0042254 ribosome biogenesis Biological Process GO:0042793 plastid transcription Biological Process GO:0042794 plastid rRNA transcription Biological Process GO:0048364 root development Biological Process
KEGG gene cross-reference	ath:AT4G02990 ath:AT5G55580 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.844

Rank 1 · TkA03G592980 · TK1151

Plastid0.099

Rank 2 · TkA03G592980 · TK1151

Nucleus0.041

Rank 3 · TkA03G592980 · TK1151

Cytoplasm0.029

Rank 4 · TkA03G592980 · TK1151

Cell membrane0.011

Rank 5 · TkA03G592980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02536mTERF77-191 aa

PF16495SWIRM-assoc_185-118 aa

PF02536mTERF155-349 aa

PF27267LdmS_N197-235 aa

PF14074DUF4257254-289 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G592980	`PF02536`	mTERF	77	191	2.2e-41	142.5
TkA03G592980	`PF16495`	SWIRM-assoc_1	85	118	0.067	13.9
TkA03G592980	`PF02536`	mTERF	155	349	2.2e-41	142.5
TkA03G592980	`PF27267`	LdmS_N	197	235	0.29	11.5
TkA03G592980	`PF14074`	DUF4257	254	289	0.043	14.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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