Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1185 bp · LXL04_011486|LXL04_011486|OH1004|cDNA
ATGGCGACTTGTCTAAATCGAAGAACTGGTACTTTGCTATCACAGAAGCCTAGAATCCTCACCTCCTTCTTCGCCGAGAGATGGTATGGTATATTCAGTTCTTCCATTACCAAGGACCTTGCTCTAATCAAAGATGGGTTAACAGCTTCTTTCTCCACATGCTCAGAGTCAACCAATGAGAATCATGAACCACTCCAACATCAGCACCAGTTACCACCAAAAACCTGTCAAGATCTATTCACACAATGGGGATGCACCGA...
1185 bp · LXL04_011486|LXL04_011486|OH1004|CDS
ATGGCGACTTGTCTAAATCGAAGAACTGGTACTTTGCTATCACAGAAGCCTAGAATCCTCACCTCCTTCTTCGCCGAGAGATGGTATGGTATATTCAGTTCTTCCATTACCAAGGACCTTGCTCTAATCAAAGATGGGTTAACAGCTTCTTTCTCCACATGCTCAGAGTCAACCAATGAGAATCATGAACCACTCCAACATCAGCACCAGTTACCACCAAAAACCTGTCAAGATCTATTCACACAATGGGGATGCACCGA...
Protein
Download Protein FASTA394 aa · LXL04_011486|LXL04_011486|OH1004|PROTEIN
MATCLNRRTGTLLSQKPRILTSFFAERWYGIFSSSITKDLALIKDGLTASFSTCSESTNENHEPLQHQHQLPPKTCQDLFTQWGCTDHETSQIFERMPSLHKSNLDKLQSKLKILQDLEFTSSDLVKIISCRPRFLQSKLDTCISERVHYLESIFGSKLTLQKAVLRNPSILTYDLKKVIKPTIELYKSMGITGPDLTLMILSHPTIITRTSLTPEKLDYIKRTGASKDSKMYKYVVTIIAISRIETIREKMANLEKFGF...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_011486 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_011486 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:165339432-165341172 (+) | |||||||||
| Description | Similar to Os05g0404000: Transcription termination factor MTERF4, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006353 DNA-templated transcription termination Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0008380 RNA splicing Biological Process GO:0009651 response to salt stress Biological Process GO:0009658 chloroplast organization Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0010343 singlet oxygen-mediated programmed cell death Biological Process GO:0032502 developmental process Biological Process GO:0042254 ribosome biogenesis Biological Process GO:0042793 plastid transcription Biological Process GO:0042794 plastid rRNA transcription Biological Process GO:0048364 root development Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT4G02990 ath:AT5G55580 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02536.20mTERF79-193 aaPF02536.20mTERF148-351 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_011486 | PF02536.20 | mTERF | 79 | 193 | 2e-42 | 145.9 |
| LXL04_011486 | PF02536.20 | mTERF | 148 | 351 | 2e-42 | 145.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.