TkA03G588860 | RubberDandelionOmics

Gene overview

TkA03G588860

Reference: TK1151 Chr: Chr03 Coordinates: 149595017-149597321 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1651 bp · TkA03G588860|TK1151|cDNA

TCACAACAACTTTCTCTAATTTTATAATATTTTCCCCCTATTTTAACTTTTGTACCATAACGTTCTAATTTGAAGAAAGTCGGCAACTTTTCTATCTCTTTACACCACAAGAATGGACACAGGAGTCTTACTTTTGGCATGTTCAATCTTTACATGGGTGTTTCTTCACCGATGGAGCCAACGATCCAACAAAGGCCCGAAAACTTGGCCTCTTGTTGGAGCCGCTATCGAACAACTAATGAATTATGACCGAATGCACG...

CDS

Download CDS FASTA

1539 bp · TkA03G588860|TK1151|CDS

ATGGACACAGGAGTCTTACTTTTGGCATGTTCAATCTTTACATGGGTGTTTCTTCACCGATGGAGCCAACGATCCAACAAAGGCCCGAAAACTTGGCCTCTTGTTGGAGCCGCTATCGAACAACTAATGAATTATGACCGAATGCACGATTGGCTGGTCAACTATCTATCAAAGTCAAGCACTGTTGTGGTCCCTATGCCCTTCACCACTTACACTTACATAGCCGACCCGGCTAATGTGGAACATGTTCTTAAAACCAA...

Protein

Download Protein FASTA

513 aa · TkA03G588860|TK1151|PROTEIN

MDTGVLLLACSIFTWVFLHRWSQRSNKGPKTWPLVGAAIEQLMNYDRMHDWLVNYLSKSSTVVVPMPFTTYTYIADPANVEHVLKTNFANYPKGEVYHSYMEVLLGNGIFNSDGENWRKQRKTASLEFASRNLRDFSTVVFREYSLKLSSILSHASFNKKQLDLQELLMRMTLDSICKVGFGVEIGTLAPNLPENQFAKAFDAANIIVTLRFIDPLWRIKKFLRVGSEAILDQSIKTIDDFTYSVIRKRKSEIEEAQEGP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G588860`
TK1151 ID	TkA03G588860
OH-1004 ID	LXL04_011451
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 99.419 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G588860

Location Chr03:149595017-149597321 (+)

Description Similar to CYP704B1: Cytochrome P450 704B1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g69500`	Involved in pollen wall development.	CYP704B1 is a long-chain fatty acid omega-hydroxylase essential for sporopollenin synthesis in pollen of Arabidopsis.2009 · DOI: 10.1104/pp.109.144469
`At4g00360`	Catalyzes the omega-hydroxylation of various fatty acids (FA).	Arabidopsis CYP86A2 represses Pseudomonas syringae type III genes and is required for cuticle development.2004 · DOI: 10.1038/sj.emboj.7600290 Molecular definitions of fatty acid hydroxylases in Arabidopsis thaliana.2007 · DOI: 10.1002/prot.21335
`At1g01600`	Catalyzes the omega-hydroxylation of various fatty acids (FA).	Molecular definitions of fatty acid hydroxylases in Arabidopsis thaliana.2007 · DOI: 10.1002/prot.21335 Nanoridges that characterize the surface morphology of flowers require the synthesis of cutin polyester.2009 · DOI: 10.1073/pnas.0909090106
`At1g63710`	Catalyzes the omega-hydroxylation of various fatty acids (FA).	Molecular definitions of fatty acid hydroxylases in Arabidopsis thaliana.2007 · DOI: 10.1002/prot.21335

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011451 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006631 fatty acid metabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0010584 pollen exine formation Biological Process

GO:0080110 sporopollenin biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0016020 membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function

GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen Molecular Function

GO:0018685 alkane 1-monooxygenase activity Molecular Function

KEGG gene cross-reference

ath:AT1G01600

ath:AT1G63710

ath:AT1G69500

ath:AT4G00360

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.920

Rank 1 · TkA03G588860 · TK1151

Cytoplasm0.050

Rank 2 · TkA03G588860 · TK1151

Cell membrane0.040

Rank 3 · TkA03G588860 · TK1151

Nucleus0.034

Rank 4 · TkA03G588860 · TK1151

Golgi apparatus0.033

Rank 5 · TkA03G588860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067p45028-500 aa

PF17027Bromo_TP_like224-280 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G588860	`PF00067`	p450	28	500	5.8e-68	230.5
TkA03G588860	`PF17027`	Bromo_TP_like	224	280	0.19	12.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C788`	Arabidopsis thaliana	sp\|Q9C788\|C70B1_ARATH Cytochrome P450 704B1	75.600%	Swiss-Prot	High
`O23066`	Arabidopsis thaliana	sp\|O23066\|C86A2_ARATH Cytochrome P450 86A2	43.000%	Swiss-Prot	Medium
`Q9LMM1`	Arabidopsis thaliana	sp\|Q9LMM1\|C86A4_ARATH Cytochrome P450 86A4	42.300%	Swiss-Prot	Medium
`Q9CAD6`	Arabidopsis thaliana	sp\|Q9CAD6\|C86A7_ARATH Cytochrome P450 86A7	40.300%	Swiss-Prot	Medium

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