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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G564280
Reference: TK1151 Chr: Chr03 Coordinates: 143192307-143196203 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2173 bp · TkA03G564280|TK1151|cDNA

AAATCAGAACCCGTGTATAAAACCTTCCGATTAATCCCCTTCTTCCCCGGGCGTTAATTTCTTTCGGTGCGGCGGCCTGAACCACAGCGATGGACAACGGAAACAACATGAAGAAATCACCGTCCTCAAGTAAAATATCTGTCGACCAATTCGTCTCGAAAATGAACCCCCTTATCGATATGGAAAAGGAAGCTGAGATATCTGCATCGATGAGCTCCGGTGCTAATAGAAATCTGGAATCTGCTTCAAAAAGAGGATCT...

CDS

Download CDS FASTA

1953 bp · TkA03G564280|TK1151|CDS

ATGGACAACGGAAACAACATGAAGAAATCACCGTCCTCAAGTAAAATATCTGTCGACCAATTCGTCTCGAAAATGAACCCCCTTATCGATATGGAAAAGGAAGCTGAGATATCTGCATCGATGAGCTCCGGTGCTAATAGAAATCTGGAATCTGCTTCAAAAAGAGGATCTACCCTTCTTAATTTGAAATGCGTCGATGTTCAGACAGGGTTAATGGGCAAAAGTCTCCTTGAACTTCAATCAAACAAAGGGGATGTTCT...

Protein

Download Protein FASTA

650 aa · TkA03G564280|TK1151|PROTEIN

MDNGNNMKKSPSSSKISVDQFVSKMNPLIDMEKEAEISASMSSGANRNLESASKRGSTLLNLKCVDVQTGLMGKSLLELQSNKGDVLPAHKFGTHDVVVLKPNKSDLSSPALGQGVVYRLKDSSITIAFDDIPEEGLNSPLRIEKVANEVTYRRMKDTLVQLSKGIQKGPASDLVPVLFGEKPPTIVKKDVSFTPFNKNLDHSQKDAIKKALSSKDLFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G564280
TK1151 IDTkA03G564280
OH-1004 IDLXL04_011072
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G564280
LocationChr03:143192307-143196203 (+)
DescriptionSimilar to Ighmbp2: DNA-binding protein SMUBP-2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011072 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006412 translation Biological Process
GO:0006974 DNA damage response Biological Process
GO:1903459 mitotic DNA replication lagging strand elongation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0016020 membrane Cellular Component
GO:0016604 nuclear body Cellular Component
GO:0033203 DNA helicase A complex Cellular Component
KEGG gene cross-reference
hsa:3508
maua:101836074
rno:29532
spo:2539412
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.355
Rank 1 · TkA03G564280 · TK1151
Nucleus0.328
Rank 2 · TkA03G564280 · TK1151
Plastid0.212
Rank 3 · TkA03G564280 · TK1151
Mitochondrion0.122
Rank 4 · TkA03G564280 · TK1151
Peroxisome0.062
Rank 5 · TkA03G564280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21138SMUBP-2_HCS1_1B22-133 aa
PF05496RuvB_N142-173 aa
PF13481AAA_25197-237 aa
PF13086AAA_11199-414 aa
PF04851ResIII199-381 aa
PF13604AAA_30200-261 aa
PF05970PIF1201-259 aa
PF24883NPHP3_N201-243 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G564280PF21138SMUBP-2_HCS1_1B221334.5e-1866.0
TkA03G564280PF05496RuvB_N1421730.0002321.7
TkA03G564280PF13481AAA_251972370.0009419.6
TkA03G564280PF13086AAA_111994141.8e-66225.2
TkA03G564280PF04851ResIII1993810.0001222.7
TkA03G564280PF13604AAA_302002612.1e-1041.4
TkA03G564280PF05970PIF12012590.005617.0
TkA03G564280PF24883NPHP3_N2012430.005917.5
TkA03G564280PF00580UvrD-helicase2023450.0005820.3
TkA03G564280PF01078Mg_chelatase2022380.1712.0
TkA03G564280PF00270DEAD2032636.9e-0626.6
TkA03G564280PF02562PhoH2032430.006916.6
TkA03G564280PF13245AAA_192044111.6e-0938.8
TkA03G564280PF00931NB-ARC2042380.1312.5
TkA03G564280PF20720nSTAND32062520.0001921.8
TkA03G564280PF05496RuvB_N2072510.0002321.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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