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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G544470
Reference: TK1151 Chr: Chr03 Coordinates: 137304613-137312365 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1744 bp · TkA03G544470|TK1151|cDNA

AAGAAAAAAATTTAAAAATTACTAAAACTGTGTGTCATGTCTCATGACGAACAGAGGAGGAACAATTTGAAACACGCAATTCATGCCTTCTTCGTGTATTGCTTCATTTTTCCTATTTTTTAATCTTTTTGCTTTTTGATATTAAACTTGTTGATGGAGATGGTGATAGTCTTGCAGTTGCCGAACATACGTTTCTGATATACTGTCCAGATTCGAAACCCATTTATAATCTGTAATTTGACTTCCCGGCGAGTTTCTTA...

CDS

Download CDS FASTA

3465 bp · TkA03G544470|TK1151|CDS

ATGGACCTTTTACAAACTGAATCAGAGGGTTCAAATCAAACTGTTTCTACACAATCATCATTAATCAACGGTCTCCCAAACGACATCGCTCTAACCTGTCTAGCAAGGATTCCTCGCAGATATCACTCACTCCTCAAATGCGTTTCAAAAAGCTGGAGGGATCTGGTTTCCAGCAAACAATGGCATACCTACCGCCAAAAGCACAATCTAACAGAAACTTGGATCTACGCACTATGTAAAGACAAATCAGAACAGCTTTG...

Protein

Download Protein FASTA

1154 aa · TkA03G544470|TK1151|PROTEIN

MDLLQTESEGSNQTVSTQSSLINGLPNDIALTCLARIPRRYHSLLKCVSKSWRDLVSSKQWHTYRQKHNLTETWIYALCKDKSEQLCCYVLDPNSPKKGWKRIPDLPPNCLKRKGVGFEVLGKNLYLLGGCGWIEDATDEVYCFDATRNSWTQASPLSTARCYFACESIDDKLYAIGGLGSKSSDPHSWDTFDSKSNTWTSHVDPNVVPEIEDSLTLNGKIYIKCGSSAVSSHIYAVVYDPQNGTWQHADSDMVCGWRGP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G544470
TK1151 IDTkA03G544470
OH-1004 IDLXL04_010703
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 96.167
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G544470
LocationChr03:137304613-137312365 (-)
DescriptionSimilar to PYRD: Riboflavin biosynthesis protein PYRD, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g20960 Monofunctional pyrimidine deaminase involved in the riboflavin biosynthesis pathway.
Evolution of vitamin B2 biosynthesis: structural and functional similarity between pyrimidine deaminases of eubacterial and plant origin.2004 · DOI: 10.1074/jbc.m404406200
Identification and characterization of the missing pyrimidine reductase in the plant riboflavin biosynthesis pathway.2013 · DOI: 10.1104/pp.112.208488
At3g61350 F-box/kelch-repeat protein SKIP4. No verified direct reference in this release
At4g18950 Serine/threonine protein kinase that phosphorylates proteins on serine and threonine residues (By similarity). No verified direct reference in this release
At1g14000 Serine/threonine protein kinase which may function as an adapter protein for BRL2. No verified direct reference in this release
At2g43850 Functions as a link between plant defense pathways, stress responses and potassium homeostasis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010703 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0007229 integrin-mediated signaling pathway Biological Process
GO:0009231 riboflavin biosynthetic process Biological Process
GO:0009409 response to cold Biological Process
GO:0009637 response to blue light Biological Process
GO:0009733 response to auxin Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0010119 regulation of stomatal movement Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
GO:0010828 positive regulation of D-glucose transmembrane transport Biological Process
GO:0016567 protein ubiquitination Biological Process
KEGG gene cross-reference
ath:AT1G14000
ath:AT3G61350
ath:AT4G18950
ath:AT4G20960
zma:100191772
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.369
Rank 1 · TkA03G544470 · TK1151
Nucleus0.360
Rank 2 · TkA03G544470 · TK1151
Plastid0.190
Rank 3 · TkA03G544470 · TK1151
Cell membrane0.110
Rank 4 · TkA03G544470 · TK1151
Mitochondrion0.065
Rank 5 · TkA03G544470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box23-60 aa
PF12937F-box-like23-64 aa
PF25210Kelch_FKB9542-95 aa
PF07646Kelch_284-107 aa
PF24681Kelch_KLHDC2_KLHL20_DRC788-249 aa
PF24996NANM88-154 aa
PF25210Kelch_FKB9594-316 aa
PF24981Beta-prop_ATRN-LZTR196-255 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G544470PF00646F-box23601.2e-0525.8
TkA03G544470PF12937F-box-like23640.09613.2
TkA03G544470PF25210Kelch_FKB9542951.2e-2281.5
TkA03G544470PF07646Kelch_2841075.5e-0730.0
TkA03G544470PF24681Kelch_KLHDC2_KLHL20_DRC7882495.8e-1142.8
TkA03G544470PF24996NANM881544.3e-0729.8
TkA03G544470PF25210Kelch_FKB95943161.2e-2281.5
TkA03G544470PF24981Beta-prop_ATRN-LZTR1962557.9e-0626.1
TkA03G544470PF13964Beta-prop_Calicin982729.2e-1038.7
TkA03G544470PF01344Kelch_11131574.6e-1658.7
TkA03G544470PF07646Kelch_21201575.5e-0730.0
TkA03G544470PF13415Beta-prop_FBX421232493e-0627.7
TkA03G544470PF01344Kelch_11602004.6e-1658.7
TkA03G544470PF07646Kelch_21612005.5e-0730.0
TkA03G544470PF24996NANM1672594.3e-0729.8
TkA03G544470PF01344Kelch_12162474.6e-1658.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GWP5Arabidopsis thalianasp|Q8GWP5|RIBD_ARATH Riboflavin biosynthesis protein PYRD, chloroplastic53.800%Swiss-ProtHigh
Q9M2C9Arabidopsis thalianasp|Q9M2C9|SKIP4_ARATH F-box/kelch-repeat protein SKIP449.900%Swiss-ProtMedium
Q93Z30Arabidopsis thalianasp|Q93Z30|BHP_ARATH Serine/threonine-protein kinase 1242.200%Swiss-ProtLow
Q9XI87Arabidopsis thalianasp|Q9XI87|VIK_ARATH Serine/threonine-protein kinase VIK42.400%Swiss-ProtLow
F4IS56Arabidopsis thalianasp|F4IS56|ILK1_ARATH Integrin-linked protein kinase 134.400%Swiss-ProtMedium

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