Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1824 bp · TkA03G536200|TK1151|cDNA
TTGTTTACCAGCTGTGAAAACTTAGCACAAAAGCAAATACTTTGTGAAGGTTTCTGCTTCTCTACTCAATCGATTTCCCCGATCAAAATTCCAACACCGGAGCAAAGAATGGTGCCCCCGCCGCCTTCTCCGACGTCTTCGATGGCTCAGTATACTCAACAATTTCTCAGCTCTGTCCTCTCCCAGCGTGGCCCATCTTCCCTTCCATACTCAGAAGACGTTAAATGGCTAATCCGTCAACACCTCCTCTCGCTCTCCGA...
1377 bp · TkA03G536200|TK1151|CDS
TTGTTTACCAGCTGTGAAAACTTAGCACAAAAGCAAATACTTTGTGAAGGTTTCTGCTTCTCTACTCAATCGATTTCCCCGATCAAAATTCCAACACCGGAGCAAAGAATGGTGCCCCCGCCGCCTTCTCCGACGTCTTCGATGGCTCAGTATACTCAACAATTTCTCAGCTCTGTCCTCTCCCAGCGTGGCCCATCTTCCCTTCCATACTCAGAAGACGTTAAATGGCTAATCCGTCAACACCTCCTCTCGCTCTCCGA...
Protein
Download Protein FASTA458 aa · TkA03G536200|TK1151|PROTEIN
LFTSCENLAQKQILCEGFCFSTQSISPIKIPTPEQRMVPPPPSPTSSMAQYTQQFLSSVLSQRGPSSLPYSEDVKWLIRQHLLSLSDAYPSLQPKTATFTHNDGRSINLLQSDGTVPMVFQNVTYNIPVVIWLMETYPRHPPLVFVNPTRDMVIKRQHPFVNPSGSVSIPYLQNWVYPSSNLVDLARNLGNYFGSDPPLYSQRRPNPNPNPNPNPNPNPSPSFNASGSSGSVSSGSIRPAIPPRTYPPSPYVSSSGRIPS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA03G536200 |
|---|---|
| TK1151 ID | TkA03G536200 |
| OH-1004 ID | LXL04_036927 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 28.400 |
| Protein coverage (%) | TK1151 79.913 / OH-1004 89.521Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA03G536200 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:134948048-134950596 (-) | |||||||||
| Description | Similar to ELCL: Protein ELC-like | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006858 extracellular transport Biological Process GO:0007175 negative regulation of epidermal growth factor-activated receptor activity Biological Process GO:0008333 endosome to lysosome transport Biological Process GO:0009611 response to wounding Biological Process GO:0010091 trichome branching Biological Process GO:0015031 protein transport Biological Process GO:0016236 macroautophagy Biological Process GO:0019076 viral release from host cell Biological Process GO:0036258 multivesicular body assembly Biological Process GO:0039702 viral budding via host ESCRT complex Biological Process GO:0042059 negative regulation of epidermal growth factor receptor signaling pathway Biological Process GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT3G12400 ath:AT5G13860 ddi:DDB_G0286797 hsa:7251 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF26095CC_Bre149-74 aaPF05743UEV73-201 aaPF00179UQ_con119-175 aaPF26095CC_Bre1280-343 aaPF30378CEP135_TSGA10_CC281-344 aaPF27603AKAP9_C287-362 aaPF10473CENP-F_leu_zip297-343 aaPF04822Takusan317-345 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA03G536200 | PF26095 | CC_Bre1 | 49 | 74 | 0.82 | 10.7 |
| TkA03G536200 | PF05743 | UEV | 73 | 201 | 7.7e-43 | 146.2 |
| TkA03G536200 | PF00179 | UQ_con | 119 | 175 | 0.058 | 13.7 |
| TkA03G536200 | PF26095 | CC_Bre1 | 280 | 343 | 0.82 | 10.7 |
| TkA03G536200 | PF30378 | CEP135_TSGA10_CC | 281 | 344 | 0.061 | 12.3 |
| TkA03G536200 | PF27603 | AKAP9_C | 287 | 362 | 0.073 | 11.1 |
| TkA03G536200 | PF10473 | CENP-F_leu_zip | 297 | 343 | 0.15 | 12.8 |
| TkA03G536200 | PF04822 | Takusan | 317 | 345 | 0.18 | 12.4 |
| TkA03G536200 | PF09454 | Vps23_core | 373 | 433 | 7.3e-25 | 87.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.