TkA03G534360 | RubberDandelionOmics

Gene overview

TkA03G534360

Reference: TK1151 Chr: Chr03 Coordinates: 134406115-134408225 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1750 bp · TkA03G534360|TK1151|cDNA

TTTATATCTTCACTTCCAGTCCCCTACTCTCAACCTACCTCCTTCCCTCCCTCCCTCTCTCTCAATAGCAATTGCTTTCTGGTTATTTGGTGATTTCTGATTCTATATGTCCTCAAATTCTCATTCTATCGCCAGATTTTGAATTTATCTTCGTGTTGTTATCATCAATACTTCAAGTTTTCAATTTTTTCCAACACATAAAGCTAACAAGTTTTTCCAAATTCTCTCTCTAGAGGAAATGCTAGATAATTCAGATATGT...

CDS

Download CDS FASTA

1245 bp · TkA03G534360|TK1151|CDS

ATGCTAGATAATTCAGATATGTTTGAAGCAAGTGGTTGCTTTGATCCAAATTCTGTAACTCACCATCAACAAGTTCTTATTGATCATCAAGGTGACAGTTTCCATCAAATGCCCAATTTCTCCTCCATTGAAGCACCTGCAGATCAGCTTCATCACCAACATCTCATGAACATGGACATGGATCACCAAAACCACCAACAAATCAATTGGTCTCATAATCCTCATGATCAGATACTTATGGGGAATGATAACAATTGTTT...

Protein

Download Protein FASTA

414 aa · TkA03G534360|TK1151|PROTEIN

MLDNSDMFEASGCFDPNSVTHHQQVLIDHQGDSFHQMPNFSSIEAPADQLHHQHLMNMDMDHQNHQQINWSHNPHDQILMGNDNNCFPTPTPPDLLNLFQLPRCSSSICFSNPTHIDQNSGQVMYDPLLPHNLPPQPPFFRELLNSLPNGFNLTGCGSIFGEMDMERGEQNQLYHDGDAVLEFGGGIINGKGRDNKDTKHFATEKHRRQQLNGKFEALKGLVPNPTKADRASVVGDAIDYINELKRTVEELKILVERKRC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G534360`
TK1151 ID	TkA03G534360
OH-1004 ID	LXL04_010535
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G534360

Location Chr03:134406115-134408225 (+)

Description Similar to BHLH91: Transcription factor bHLH91

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g31220`	Transcription factor bHLH10.	No verified direct reference in this release
`At2g31210`	Transcription factor bHLH91.	No verified direct reference in this release
`At1g06170`	Transcription factor bHLH89.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0599300`	Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development.	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice.2013 · DOI: 10.1038/ncomms2396
`Os01g0293100`	Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression.	The bHLH142 Transcription Factor Coordinates with TDR1 to Modulate the Expression of EAT1 and Regulate Pollen Development in Rice.2014 · DOI: 10.1105/tpc.114.126292

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010535 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009555 pollen development Biological Process

GO:0043068 positive regulation of programmed cell death Biological Process

GO:0048658 anther wall tapetum development Biological Process

GO:0052543 callose deposition in cell wall Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0046983 protein dimerization activity Molecular Function

GO:0070888 E-box binding Molecular Function

KEGG gene cross-reference

ath:AT1G06170

ath:AT2G31210

ath:AT2G31220

dosa:Os01g0293100

dosa:Os04g0599300

osa:4336865

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.977

Rank 1 · TkA03G534360 · TK1151

Cytoplasm0.089

Rank 2 · TkA03G534360 · TK1151

Cell membrane0.026

Rank 3 · TkA03G534360 · TK1151

Endoplasmic reticulum0.021

Rank 4 · TkA03G534360 · TK1151

Plastid0.012

Rank 5 · TkA03G534360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00010HLH198-245 aa

PF23179bHLH_INO2198-232 aa

PF23177bHLH_IRO3202-269 aa

PF23173bHLH_SAC51204-247 aa

PF00010HLH254-261 aa

PF22754bHLH-TF_ACT-like_plant325-365 aa

PF23179bHLH_INO2339-359 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G534360	`PF00010`	HLH	198	245	2.1e-11	44.2
TkA03G534360	`PF23179`	bHLH_INO2	198	232	0.028	15.3
TkA03G534360	`PF23177`	bHLH_IRO3	202	269	9.8e-07	29.8
TkA03G534360	`PF23173`	bHLH_SAC51	204	247	0.076	13.7
TkA03G534360	`PF00010`	HLH	254	261	2.1e-11	44.2
TkA03G534360	`PF22754`	bHLH-TF_ACT-like_plant	325	365	0.013	16.3
TkA03G534360	`PF23179`	bHLH_INO2	339	359	0.028	15.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84TK1`	Arabidopsis thaliana	sp\|Q84TK1\|BH010_ARATH Transcription factor bHLH10	45.900%	Swiss-Prot	Medium
`Q8GX46`	Arabidopsis thaliana	sp\|Q8GX46\|BH091_ARATH Transcription factor bHLH91	42.600%	Swiss-Prot	Medium
`Q9LND0`	Arabidopsis thaliana	sp\|Q9LND0\|BH089_ARATH Transcription factor bHLH89	41.100%	Swiss-Prot	Medium
`Q7X8R0`	Oryza sativa subsp. japonica	sp\|Q7X8R0\|EAT1_ORYSJ Transcription factor EAT1	43.600%	Swiss-Prot	Medium
`Q5JNS0`	Oryza sativa subsp. japonica	sp\|Q5JNS0\|TIP2_ORYSJ Transcription factor TIP2	42.100%	Swiss-Prot	Low

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