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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G532520
Reference: TK1151 Chr: Chr03 Coordinates: 133940035-133942397 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1981 bp · TkA03G532520|TK1151|cDNA

ATCTGTTTTGAAACTCTGATTCACGCTAGCCTTAAACCCCAAGCACGGCTAATACCTTTGCTTTGACATCACCACCATCATCGGCAAATGGAGATCGACGAGAACGAAAACCCTAACGCTAACCCTAATGCCACCACTTCACCTCCAGACTCCATTGCTCAAATTGCACCAGTCGAGCCTCCAATTCCAGTAGCCCCAACTGCAATCTTACCCCCAATCGCTCCAATCCCACGTCCACTCGCCCATCTTCCCCCCGTTCG...

CDS

Download CDS FASTA

1668 bp · TkA03G532520|TK1151|CDS

ATGGAGATCGACGAGAACGAAAACCCTAACGCTAACCCTAATGCCACCACTTCACCTCCAGACTCCATTGCTCAAATTGCACCAGTCGAGCCTCCAATTCCAGTAGCCCCAACTGCAATCTTACCCCCAATCGCTCCAATCCCACGTCCACTCGCCCATCTTCCCCCCGTTCGTCCACCAAATGGCGACGCAGCGAAGGCAACAAACAAAGACGCCGATTCTGACGAAGAAGGCGATGATTCGGGTCCCGAATACGAAAT...

Protein

Download Protein FASTA

555 aa · TkA03G532520|TK1151|PROTEIN

MEIDENENPNANPNATTSPPDSIAQIAPVEPPIPVAPTAILPPIAPIPRPLAHLPPVRPPNGDAAKATNKDADSDEEGDDSGPEYEISEESRLFREKQEKAKQEFLMKQRAAALAVPTNDNSVRSRLRRLEEPVTLFGEKEMERRDRLRMLMARLDSDGQSDKLLKVLEEEEAAAANAAGIDDGSYEVEGEAVQYPFYTEGSMALLKARYEIAKDSVVKSAKRLARARRKRNDPDEDEDSEINWVLENAKTFSLDCSEIG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G532520
TK1151 IDTkA03G532520
OH-1004 IDLXL04_010520
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G532520
LocationChr03:133940035-133942397 (-)
DescriptionSimilar to LIS: U4/U6 small nuclear ribonucleoprotein PRP4-like protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g41500 Participates in pre-mRNA splicing. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010520 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000244 spliceosomal tri-snRNP complex assembly Biological Process
GO:0000245 spliceosomal complex assembly Biological Process
GO:0000375 RNA splicing, via transesterification reactions Biological Process
GO:0000387 spliceosomal snRNP assembly Biological Process
GO:0000388 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0001709 cell fate determination Biological Process
GO:0006396 RNA processing Biological Process
GO:0007267 cell-cell signaling Biological Process
GO:0008380 RNA splicing Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009560 embryo sac egg cell differentiation Biological Process
KEGG gene cross-reference
ath:AT2G41500
bta:508735
hsa:9128
mmu:70052
pon:100174168
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.711
Rank 1 · TkA03G532520 · TK1151
Cytoplasm0.314
Rank 2 · TkA03G532520 · TK1151
Cell membrane0.035
Rank 3 · TkA03G532520 · TK1151
Mitochondrion0.034
Rank 4 · TkA03G532520 · TK1151
Lysosome / Vacuole0.023
Rank 5 · TkA03G532520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08799PRP4123-149 aa
PF23389Beta-prop_WDR19_1st244-341 aa
PF25047Beta-prop_TEP1_2nd250-282 aa
PF16529Ge1_WD40258-290 aa
PF23761Beta-prop_DCAF4259-310 aa
PF24817WD40_WDHD1_1st260-304 aa
PF24805EIF3I260-334 aa
PF12894ANAPC4_WD40260-311 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G532520PF08799PRP41231494.4e-1039.6
TkA03G532520PF23389Beta-prop_WDR19_1st2443411e-0628.7
TkA03G532520PF25047Beta-prop_TEP1_2nd2502823.5e-2692.6
TkA03G532520PF16529Ge1_WD402582900.001318.5
TkA03G532520PF23761Beta-prop_DCAF42593101.2e-0938.3
TkA03G532520PF24817WD40_WDHD1_1st2603043.4e-41142.0
TkA03G532520PF24805EIF3I2603342.2e-35123.0
TkA03G532520PF12894ANAPC4_WD402603112.6e-1350.7
TkA03G532520PF25173Beta-prop_WDR3_1st2614159.6e-57192.4
TkA03G532520PF25175Beta-prop_WDR52624438e-72242.7
TkA03G532520PF24780WD40_MABP1-WDR62_1st2623344.3e-1866.4
TkA03G532520PF24814WD40_Prp192632981.8e-66224.8
TkA03G532520PF23414Beta-prop_EML_22633793.8e-34119.0
TkA03G532520PF25171Beta-prop_WDR36-Utp21_1st2633315e-1969.5
TkA03G532520PF23409Beta-prop_EML2633442.1e-1660.9
TkA03G532520PF25460Beta-prop_Aladin2633344.4e-1246.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O22212Arabidopsis thalianasp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein57.000%Swiss-ProtLow

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